//============================================================================ // Copyright (c) Kitware, Inc. // All rights reserved. // See LICENSE.txt for details. // // This software is distributed WITHOUT ANY WARRANTY; without even // the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR // PURPOSE. See the above copyright notice for more information. //============================================================================ // Copyright (c) 2016, Los Alamos National Security, LLC // All rights reserved. // // Copyright 2016. Los Alamos National Security, LLC. // This software was produced under U.S. Government contract DE-AC52-06NA25396 // for Los Alamos National Laboratory (LANL), which is operated by // Los Alamos National Security, LLC for the U.S. Department of Energy. // The U.S. Government has rights to use, reproduce, and distribute this // software. NEITHER THE GOVERNMENT NOR LOS ALAMOS NATIONAL SECURITY, LLC // MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY FOR THE // USE OF THIS SOFTWARE. If software is modified to produce derivative works, // such modified software should be clearly marked, so as not to confuse it // with the version available from LANL. // // Additionally, redistribution and use in source and binary forms, with or // without modification, are permitted provided that the following conditions // are met: // // 1. Redistributions of source code must retain the above copyright notice, // this list of conditions and the following disclaimer. // 2. Redistributions in binary form must reproduce the above copyright notice, // this list of conditions and the following disclaimer in the documentation // and/or other materials provided with the distribution. // 3. Neither the name of Los Alamos National Security, LLC, Los Alamos // National Laboratory, LANL, the U.S. Government, nor the names of its // contributors may be used to endorse or promote products derived from // this software without specific prior written permission. // // THIS SOFTWARE IS PROVIDED BY LOS ALAMOS NATIONAL SECURITY, LLC AND // CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, // BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS // FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL LOS ALAMOS // NATIONAL SECURITY, LLC OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, // INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, // BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF // USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY // THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT // (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF // THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. //============================================================================ // This code is based on the algorithm presented in the paper: // “Parallel Peak Pruning for Scalable SMP Contour Tree Computation.” // Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens. // Proceedings of the IEEE Symposium on Large Data Analysis and Visualization // (LDAV), October 2016, Baltimore, Maryland. //======================================================================================= // // COMMENTS: // // After the core join tree is constructed, we need to assign each vertex to a join superarc // This was previously done with a set of rocking iterations, which burned extra memory and // work. The OpenMP version was therefore updated so that each vertex looped until it found // it's destination arc. // // This functor implements that for use by a for_each call. // // Any vector needed by the functor for lookup purposes will be passed as a parameter to // the constructor and saved, with the actual function call being the operator () // // Vectors marked I/O are intrinsically risky unless there is an algorithmic guarantee // that the read/writes are completely independent - which for our case actually occurs // The I/O vectors should therefore be justified in comments both here & in caller // //======================================================================================= #ifndef vtkm_worklet_contourtree_join_super_arc_finder_h #define vtkm_worklet_contourtree_join_super_arc_finder_h #include #include #include namespace vtkm { namespace worklet { namespace contourtree { // Worklet for finding join superarc - expressed as a unary functor since it is not // guaranteed to write back // There will be no out-of-sequence writes, since: // 1. Critical points are already set and are simply skipped // 2. Regular points only read from critical points // 3. Regular points only write to critical points // template class JoinSuperArcFinder : public vtkm::worklet::WorkletMapField { public: using TagType = vtkm::List; using ControlSignature = void(FieldIn vertex, // (input) index into sorted edges WholeArrayIn values, // (input) data values WholeArrayInOut saddles, // (in out) saddles WholeArrayInOut extrema); // (in out) maxima using ExecutionSignature = void(_1, _2, _3, _4); using InputDomain = _1; bool isJoinTree; // Constructor VTKM_EXEC_CONT JoinSuperArcFinder(bool IsJoinTree) : isJoinTree(IsJoinTree) { } template VTKM_EXEC void operator()(const vtkm::Id& vertex, const InFieldPortalType& values, const OutFieldPortalType& saddles, const OutFieldPortalType& extrema) const { VertexValueComparator lessThan(values); // local copies vtkm::Id saddle = saddles.Get(vertex); vtkm::Id extreme = extrema.Get(vertex); // now test for regular points if (saddle != extreme) return; // while loop while (lessThan(saddle, vertex, isJoinTree)) { // saddle above vertex extreme = extrema.Get(saddle); saddle = saddles.Get(saddle); // if we're in the trunk, break immediately if (saddle == NO_VERTEX_ASSIGNED) break; } // saddle above vertex // when done, write back to the array extrema.Set(vertex, extreme); saddles.Set(vertex, saddle); } }; // JoinSuperArcFinder } } } #endif