//============================================================================ // Copyright (c) Kitware, Inc. // All rights reserved. // See LICENSE.txt for details. // // This software is distributed WITHOUT ANY WARRANTY; without even // the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR // PURPOSE. See the above copyright notice for more information. //============================================================================ // Copyright (c) 2018, The Regents of the University of California, through // Lawrence Berkeley National Laboratory (subject to receipt of any required approvals // from the U.S. Dept. of Energy). All rights reserved. // // Redistribution and use in source and binary forms, with or without modification, // are permitted provided that the following conditions are met: // // (1) Redistributions of source code must retain the above copyright notice, this // list of conditions and the following disclaimer. // // (2) Redistributions in binary form must reproduce the above copyright notice, // this list of conditions and the following disclaimer in the documentation // and/or other materials provided with the distribution. // // (3) Neither the name of the University of California, Lawrence Berkeley National // Laboratory, U.S. Dept. of Energy nor the names of its contributors may be // used to endorse or promote products derived from this software without // specific prior written permission. // // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND // ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED // WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. // IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, // INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, // BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, // DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF // LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE // OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED // OF THE POSSIBILITY OF SUCH DAMAGE. // //============================================================================= // // This code is an extension of the algorithm presented in the paper: // Parallel Peak Pruning for Scalable SMP Contour Tree Computation. // Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens. // Proceedings of the IEEE Symposium on Large Data Analysis and Visualization // (LDAV), October 2016, Baltimore, Maryland. // // The PPP2 algorithm and software were jointly developed by // Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and // Oliver Ruebel (LBNL) //============================================================================== #include #include #include #include #include #include #include #include #include #include namespace { using vtkm::cont::testing::MakeTestDataSet; class TestContourTreeUniform { public: // // Create a uniform 2D structured cell set as input with values for contours // void TestContourTree_Mesh2D_Freudenthal() const { std::cout << "Testing ContourTree_PPP2 2D Mesh" << std::endl; // Create the input uniform cell set with values to contour vtkm::cont::DataSet dataSet = MakeTestDataSet().Make2DUniformDataSet1(); vtkm::cont::CellSetStructured<2> cellSet; dataSet.GetCellSet().CopyTo(cellSet); vtkm::Id2 pointDimensions = cellSet.GetPointDimensions(); vtkm::Id nRows = pointDimensions[0]; vtkm::Id nCols = pointDimensions[1]; vtkm::Id nSlices = 1; vtkm::cont::ArrayHandle field; dataSet.GetField("pointvar").GetData().CopyTo(field); // Create the worklet and run it vtkm::worklet::ContourTreePPP2 contourTreeWorklet; std::vector> timings; vtkm::worklet::contourtree_augmented::ContourTree contourTree; vtkm::worklet::contourtree_augmented::IdArrayType meshSortOrder; vtkm::Id numIterations; const bool useMarchingCubes = false; const bool computeRegularStructure = true; contourTreeWorklet.Run(field, timings, contourTree, meshSortOrder, numIterations, nRows, nCols, nSlices, useMarchingCubes, computeRegularStructure); // Compute the saddle peaks to make sure the contour tree is correct vtkm::worklet::contourtree_augmented::EdgePairArray saddlePeak; vtkm::worklet::contourtree_augmented::ProcessContourTree::CollectSortedSuperarcs( contourTree, meshSortOrder, saddlePeak); // Print the contour tree we computed std::cout << "Computed Contour Tree" << std::endl; vtkm::worklet::contourtree_augmented::printEdgePairArray(saddlePeak); // Print the expected contour tree std::cout << "Expected Contour Tree" << std::endl; std::cout << " 0 12" << std::endl; std::cout << " 4 13" << std::endl; std::cout << " 12 13" << std::endl; std::cout << " 12 18" << std::endl; std::cout << " 12 20" << std::endl; std::cout << " 13 14" << std::endl; std::cout << " 13 19" << std::endl; VTKM_TEST_ASSERT(test_equal(saddlePeak.GetNumberOfValues(), 7), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(0), vtkm::make_Pair(0, 12)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(1), vtkm::make_Pair(4, 13)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(2), vtkm::make_Pair(12, 13)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(3), vtkm::make_Pair(12, 18)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(4), vtkm::make_Pair(12, 20)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(5), vtkm::make_Pair(13, 14)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(6), vtkm::make_Pair(13, 19)), "Wrong result for ContourTree filter"); } void TestContourTree_Mesh3D_Freudenthal() const { std::cout << "Testing ContourTree_PPP2 3D Mesh" << std::endl; // Create the input uniform cell set with values to contour vtkm::cont::DataSet dataSet = MakeTestDataSet().Make3DUniformDataSet1(); vtkm::cont::CellSetStructured<3> cellSet; dataSet.GetCellSet().CopyTo(cellSet); vtkm::Id3 pointDimensions = cellSet.GetPointDimensions(); vtkm::Id nRows = pointDimensions[0]; vtkm::Id nCols = pointDimensions[1]; vtkm::Id nSlices = pointDimensions[2]; vtkm::cont::ArrayHandle field; dataSet.GetField("pointvar").GetData().CopyTo(field); // Create the worklet and run it vtkm::worklet::ContourTreePPP2 contourTreeWorklet; std::vector> timings; vtkm::worklet::contourtree_augmented::ContourTree contourTree; vtkm::worklet::contourtree_augmented::IdArrayType meshSortOrder; vtkm::Id numIterations; const bool useMarchingCubes = false; const bool computeRegularStructure = true; contourTreeWorklet.Run(field, timings, contourTree, meshSortOrder, numIterations, nRows, nCols, nSlices, useMarchingCubes, computeRegularStructure); // Compute the saddle peaks to make sure the contour tree is correct vtkm::worklet::contourtree_augmented::EdgePairArray saddlePeak; vtkm::worklet::contourtree_augmented::ProcessContourTree::CollectSortedSuperarcs( contourTree, meshSortOrder, saddlePeak); // Print the contour tree we computed std::cout << "Computed Contour Tree" << std::endl; vtkm::worklet::contourtree_augmented::printEdgePairArray(saddlePeak); // Print the expected contour tree std::cout << "Expected Contour Tree" << std::endl; std::cout << " 0 67" << std::endl; std::cout << " 31 42" << std::endl; std::cout << " 42 43" << std::endl; std::cout << " 42 56" << std::endl; std::cout << " 56 67" << std::endl; std::cout << " 56 92" << std::endl; std::cout << " 62 67" << std::endl; std::cout << " 81 92" << std::endl; std::cout << " 92 93" << std::endl; // Make sure the contour tree is correct VTKM_TEST_ASSERT(test_equal(saddlePeak.GetNumberOfValues(), 9), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(0), vtkm::make_Pair(0, 67)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(1), vtkm::make_Pair(31, 42)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(2), vtkm::make_Pair(42, 43)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(3), vtkm::make_Pair(42, 56)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(4), vtkm::make_Pair(56, 67)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(5), vtkm::make_Pair(56, 92)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(6), vtkm::make_Pair(62, 67)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(7), vtkm::make_Pair(81, 92)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(8), vtkm::make_Pair(92, 93)), "Wrong result for ContourTree filter"); } void TestContourTree_Mesh3D_MarchingCubes() const { std::cout << "Testing ContourTree_PPP2 3D Mesh Marching Cubes" << std::endl; // Create the input uniform cell set with values to contour vtkm::cont::DataSet dataSet = MakeTestDataSet().Make3DUniformDataSet1(); vtkm::cont::CellSetStructured<3> cellSet; dataSet.GetCellSet().CopyTo(cellSet); vtkm::Id3 pointDimensions = cellSet.GetPointDimensions(); vtkm::Id nRows = pointDimensions[0]; vtkm::Id nCols = pointDimensions[1]; vtkm::Id nSlices = pointDimensions[2]; vtkm::cont::ArrayHandle field; dataSet.GetField("pointvar").GetData().CopyTo(field); // Create the worklet and run it vtkm::worklet::ContourTreePPP2 contourTreeWorklet; std::vector> timings; vtkm::worklet::contourtree_augmented::ContourTree contourTree; vtkm::worklet::contourtree_augmented::IdArrayType meshSortOrder; vtkm::Id numIterations; const bool useMarchingCubes = true; const bool computeRegularStructure = true; contourTreeWorklet.Run(field, timings, contourTree, meshSortOrder, numIterations, nRows, nCols, nSlices, useMarchingCubes, computeRegularStructure); // Compute the saddle peaks to make sure the contour tree is correct vtkm::worklet::contourtree_augmented::EdgePairArray saddlePeak; vtkm::worklet::contourtree_augmented::ProcessContourTree::CollectSortedSuperarcs( contourTree, meshSortOrder, saddlePeak); // Print the contour tree we computed std::cout << "Computed Contour Tree" << std::endl; vtkm::worklet::contourtree_augmented::printEdgePairArray(saddlePeak); // Print the expected contour tree std::cout << "Expected Contour Tree" << std::endl; std::cout << " 0 118" << std::endl; std::cout << " 31 41" << std::endl; std::cout << " 41 43" << std::endl; std::cout << " 41 56" << std::endl; std::cout << " 56 67" << std::endl; std::cout << " 56 91" << std::endl; std::cout << " 62 67" << std::endl; std::cout << " 67 118" << std::endl; std::cout << " 81 91" << std::endl; std::cout << " 91 93" << std::endl; std::cout << " 118 124" << std::endl; VTKM_TEST_ASSERT(test_equal(saddlePeak.GetNumberOfValues(), 11), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(0), vtkm::make_Pair(0, 118)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(1), vtkm::make_Pair(31, 41)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(2), vtkm::make_Pair(41, 43)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(3), vtkm::make_Pair(41, 56)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(4), vtkm::make_Pair(56, 67)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(5), vtkm::make_Pair(56, 91)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(6), vtkm::make_Pair(62, 67)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(7), vtkm::make_Pair(67, 118)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(8), vtkm::make_Pair(81, 91)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(9), vtkm::make_Pair(91, 93)), "Wrong result for ContourTree filter"); VTKM_TEST_ASSERT(test_equal(saddlePeak.GetPortalControl().Get(10), vtkm::make_Pair(118, 124)), "Wrong result for ContourTree filter"); } void operator()() const { this->TestContourTree_Mesh2D_Freudenthal(); this->TestContourTree_Mesh3D_Freudenthal(); this->TestContourTree_Mesh3D_MarchingCubes(); } }; } int UnitTestContourTreeUniformAugmented(int argc, char* argv[]) { return vtkm::cont::testing::Testing::Run(TestContourTreeUniform(), argc, argv); }