{ stdenv, fetchPypi, fetchpatch, python, buildPythonPackage , numpy, hdf5, cython, six, pkgconfig , mpi4py ? null, openssh }: assert hdf5.mpiSupport -> mpi4py != null && hdf5.mpi == mpi4py.mpi; with stdenv.lib; let mpi = hdf5.mpi; mpiSupport = hdf5.mpiSupport; in buildPythonPackage rec { version = "2.7.1"; pname = "h5py"; src = fetchPypi { inherit pname version; sha256 = "180a688311e826ff6ae6d3bda9b5c292b90b28787525ddfcb10a29d5ddcae2cc"; }; configure_flags = "--hdf5=${hdf5}" + optionalString mpiSupport " --mpi"; postConfigure = '' ${python.executable} setup.py configure ${configure_flags} # Needed to run the tests reliably. See: # https://bitbucket.org/mpi4py/mpi4py/issues/87/multiple-test-errors-with-openmpi-30 ${optionalString mpiSupport "export OMPI_MCA_rmaps_base_oversubscribe=yes"} ''; preBuild = if mpiSupport then "export CC=${mpi}/bin/mpicc" else ""; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ hdf5 cython ] ++ optional mpiSupport mpi; propagatedBuildInputs = [ numpy six] ++ optionals mpiSupport [ mpi4py openssh ]; patches = [ # Patch is based on upstream patch. The tox.ini hunk had to be removed. # https://github.com/h5py/h5py/commit/5009e062a6f7d4e074cab0fcb42a780ac2b1d7d4.patch ./numpy-1.14.patch ]; meta = { description = "Pythonic interface to the HDF5 binary data format"; homepage = http://www.h5py.org/; license = stdenv.lib.licenses.bsd2; }; }