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Implement branch decomposition for hierarchical contour tree
Co-authored-by: Gunther H. Weber <GHWeber@lbl.gov>
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131
examples/contour_tree_distributed/BranchCompilerApp.cxx
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131
examples/contour_tree_distributed/BranchCompilerApp.cxx
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//============================================================================
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// Copyright (c) Kitware, Inc.
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// All rights reserved.
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// See LICENSE.txt for details.
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// This software is distributed WITHOUT ANY WARRANTY; without even
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// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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// PURPOSE. See the above copyright notice for more information.
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//
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// Copyright 2014 National Technology & Engineering Solutions of Sandia, LLC (NTESS).
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// Copyright 2014 UT-Battelle, LLC.
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// Copyright 2014 Los Alamos National Security.
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//
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// Under the terms of Contract DE-NA0003525 with NTESS,
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// the U.S. Government retains certain rights in this software.
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//
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// Under the terms of Contract DE-AC52-06NA25396 with Los Alamos National
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// Laboratory (LANL), the U.S. Government retains certain rights in
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// this software.
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//============================================================================
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// Copyright (c) 2018, The Regents of the University of California, through
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// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
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// from the U.S. Dept. of Energy). All rights reserved.
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//
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// Redistribution and use in source and binary forms, with or without modification,
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// are permitted provided that the following conditions are met:
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//
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// (1) Redistributions of source code must retain the above copyright notice, this
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// list of conditions and the following disclaimer.
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//
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// (2) Redistributions in binary form must reproduce the above copyright notice,
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// this list of conditions and the following disclaimer in the documentation
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// and/or other materials provided with the distribution.
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//
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// (3) Neither the name of the University of California, Lawrence Berkeley National
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// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
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// used to endorse or promote products derived from this software without
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// specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
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// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
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// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
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// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
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// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
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// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
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// OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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//=============================================================================
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//
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// COMMENTS:
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//
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// Input is assumed to be a sequence of lines of the form:
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// I Global ID of branch root
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// II Value of supernode
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// III Global ID of supernode
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//
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// All lines are assumed to have been sorted already. Because of how the
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// Unix sort utility operates (textual sort), the most we can assume is that all
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// supernodes corresponding to a given branch root are sorted together.
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//
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// We therefore do simple stream processing, identifying new branches by
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// the changes in root ID.
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//
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//=======================================================================================
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#include <iostream>
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#include <vtkm/worklet/contourtree_augmented/Types.h>
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int main()
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{ // main()
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// variables tracking the best & worst so far for this extent
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vtkm::Id currentBranch = vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
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// this is slightly tricky, since we don't know the range of the data type
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// yet, but we can initialize to 0 for both floats and integers, then test on
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// current branch
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vtkm::Float64 highValue = 0;
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vtkm::Float64 lowValue = 0;
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vtkm::Id highEnd = vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
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vtkm::Id lowEnd = vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
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// values to read in
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vtkm::Id nextBranch;
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vtkm::Float64 nextValue;
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vtkm::Id nextSupernode;
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while (true)
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{ // until stream goes bad
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// read the next triple
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std::cin >> nextBranch >> nextValue >> nextSupernode;
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// test in the middle before processing
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if (std::cin.eof())
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break;
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// test to see if the branch is different from the current one
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if (nextBranch != currentBranch)
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{ // new branch
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// special test for initial one
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if (!vtkm::worklet::contourtree_augmented::NoSuchElement(currentBranch))
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printf("%12llu %12llu\n", highEnd, lowEnd);
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// set the high & low value ends to this one
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highValue = nextValue;
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lowValue = nextValue;
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highEnd = nextSupernode;
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lowEnd = nextSupernode;
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// and reset the branch ID
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currentBranch = nextBranch;
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} // new branch
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else
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{ // existing branch
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// test value with simulation of simplicity
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if ((nextValue > highValue) || ((nextValue == highValue) && (nextSupernode > highEnd)))
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{ // new high end
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highEnd = nextSupernode;
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highValue = nextValue;
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} // new high end
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// test value with simulation of simplicity
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else if ((nextValue < lowValue) || ((nextValue == lowValue) && (nextSupernode < lowEnd)))
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{ // new low end
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lowEnd = nextSupernode;
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lowValue = nextValue;
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} // new low end
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} // existing branch
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} // until stream goes bad
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printf("%12llu %12llu\n", highEnd, lowEnd);
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} // main()
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@ -81,10 +81,16 @@ if (VTKm_ENABLE_MPI)
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target_link_libraries(TreeCompiler vtkm_filter)
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target_link_libraries(TreeCompiler vtkm_filter)
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vtkm_add_target_information(TreeCompiler DROP_UNUSED_SYMBOLS)
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vtkm_add_target_information(TreeCompiler DROP_UNUSED_SYMBOLS)
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add_executable(BranchCompiler BranchCompilerApp.cxx)
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target_link_libraries(BranchCompiler vtkm_filter)
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vtkm_add_target_information(BranchCompiler DROP_UNUSED_SYMBOLS)
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configure_file(split_data_2d.py split_data_2d.py COPYONLY)
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configure_file(split_data_2d.py split_data_2d.py COPYONLY)
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configure_file(split_data_3d.py split_data_3d.py COPYONLY)
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configure_file(split_data_3d.py split_data_3d.py COPYONLY)
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configure_file(hact_test.sh hact_test.sh COPYONLY)
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configure_file(hact_test.sh hact_test.sh COPYONLY)
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configure_file(hact_test_volume.sh hact_test_volume.sh COPYONLY)
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configure_file(hact_test_volume.sh hact_test_volume.sh COPYONLY)
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configure_file(hact_test_branch_decomposition.sh hact_test_branch_decomposition.sh COPYONLY)
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configure_file(testrun_branch_decomposition.sh testrun_branch_decomposition.sh COPYONLY)
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configure_file(testrun.sh testrun.sh COPYONLY)
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configure_file(testrun.sh testrun.sh COPYONLY)
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configure_file(testrun_volume.sh testrun_volume.sh COPYONLY)
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configure_file(testrun_volume.sh testrun_volume.sh COPYONLY)
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endif()
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endif()
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@ -76,6 +76,7 @@
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#include <vtkm/worklet/contourtree_augmented/ProcessContourTree.h>
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#include <vtkm/worklet/contourtree_augmented/ProcessContourTree.h>
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#include <vtkm/worklet/contourtree_augmented/Types.h>
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#include <vtkm/worklet/contourtree_augmented/Types.h>
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#include <vtkm/worklet/contourtree_distributed/HierarchicalContourTree.h>
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#include <vtkm/worklet/contourtree_distributed/HierarchicalContourTree.h>
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#include <vtkm/worklet/contourtree_distributed/HierarchicalVolumetricBranchDecomposer.h>
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#include <vtkm/worklet/contourtree_distributed/TreeCompiler.h>
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#include <vtkm/worklet/contourtree_distributed/TreeCompiler.h>
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// clang-format off
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// clang-format off
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augmentHierarchicalTree = true;
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augmentHierarchicalTree = true;
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}
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}
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bool computeHierarchicalVolumetricBranchDecomposition = false;
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if (parser.hasOption("--computeVolumeBranchDecomposition"))
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{
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computeHierarchicalVolumetricBranchDecomposition = true;
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if (!augmentHierarchicalTree)
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{
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VTKM_LOG_S(vtkm::cont::LogLevel::Warn,
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"Warning: --computeVolumeBranchDecomposition only "
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"allowed augmentation. Enabling --augmentHierarchicalTree option.");
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augmentHierarchicalTree = true;
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}
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}
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bool useBoundaryExtremaOnly = true;
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bool useBoundaryExtremaOnly = true;
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if (parser.hasOption("--useFullBoundary"))
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if (parser.hasOption("--useFullBoundary"))
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{
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{
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{
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{
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if (rank == 0)
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if (rank == 0)
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{
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{
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std::cout << "ContourTreeAugmented <options> <fileName>" << std::endl;
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std::cout << "ContourTreeDistributed <options> <fileName>" << std::endl;
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std::cout << std::endl;
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std::cout << std::endl;
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std::cout << "<fileName> Name of the input data file." << std::endl;
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std::cout << "<fileName> Name of the input data file." << std::endl;
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std::cout << "The file is expected to be ASCII with either: " << std::endl;
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std::cout << "The file is expected to be ASCII with either: " << std::endl;
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<< std::endl;
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<< std::endl;
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std::cout << " and when using only boundary extrema." << std::endl;
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std::cout << " and when using only boundary extrema." << std::endl;
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std::cout << "--augmentHierarchicalTree Augment the hierarchical tree." << std::endl;
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std::cout << "--augmentHierarchicalTree Augment the hierarchical tree." << std::endl;
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std::cout << "--computeVolumeBranchDecomposition Compute the volume branch decomposition. "
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<< std::endl;
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std::cout << " Requries --augmentHierarchicalTree to be set." << std::endl;
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std::cout << "--preSplitFiles Input data is already pre-split into blocks." << std::endl;
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std::cout << "--preSplitFiles Input data is already pre-split into blocks." << std::endl;
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std::cout << "--saveDot Save DOT files of the distributed contour tree " << std::endl
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std::cout << "--saveDot Save DOT files of the distributed contour tree " << std::endl
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<< " computation (Default=False). " << std::endl;
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<< " computation (Default=False). " << std::endl;
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<< " mc=" << useMarchingCubes << std::endl
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<< " mc=" << useMarchingCubes << std::endl
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<< " useFullBoundary=" << !useBoundaryExtremaOnly << std::endl
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<< " useFullBoundary=" << !useBoundaryExtremaOnly << std::endl
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<< " saveDot=" << saveDotFiles << std::endl
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<< " saveDot=" << saveDotFiles << std::endl
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<< " augmentHierarchicalTree=" << augmentHierarchicalTree << std::endl
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<< " computeVolumetricBranchDecomposition="
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<< computeHierarchicalVolumetricBranchDecomposition << std::endl
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<< " saveOutputData=" << saveOutputData << std::endl
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<< " saveOutputData=" << saveOutputData << std::endl
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<< " forwardSummary=" << forwardSummary << std::endl
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<< " forwardSummary=" << forwardSummary << std::endl
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<< " nblocks=" << numBlocks << std::endl);
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<< " nblocks=" << numBlocks << std::endl);
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prevTime = currTime;
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prevTime = currTime;
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// Convert the mesh of values into contour tree, pairs of vertex ids
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// Convert the mesh of values into contour tree, pairs of vertex ids
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vtkm::filter::ContourTreeUniformDistributed filter(blocksPerDim,
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vtkm::filter::ContourTreeUniformDistributed filter(
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globalSize,
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blocksPerDim,
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localBlockIndices,
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globalSize,
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localBlockOrigins,
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localBlockIndices,
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localBlockSizes,
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localBlockOrigins,
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useBoundaryExtremaOnly,
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localBlockSizes,
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useMarchingCubes,
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useBoundaryExtremaOnly,
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augmentHierarchicalTree,
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useMarchingCubes,
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saveDotFiles,
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augmentHierarchicalTree,
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timingsLogLevel,
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computeHierarchicalVolumetricBranchDecomposition,
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treeLogLevel);
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saveDotFiles,
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timingsLogLevel,
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treeLogLevel);
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filter.SetActiveField("values");
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filter.SetActiveField("values");
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// Execute the contour tree analysis
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// Execute the contour tree analysis
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{
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{
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if (augmentHierarchicalTree)
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if (augmentHierarchicalTree)
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{
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{
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for (vtkm::Id ds_no = 0; ds_no < result.GetNumberOfPartitions(); ++ds_no)
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if (computeHierarchicalVolumetricBranchDecomposition)
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{
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{
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auto ds = result.GetPartition(ds_no);
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for (vtkm::Id ds_no = 0; ds_no < result.GetNumberOfPartitions(); ++ds_no)
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vtkm::worklet::contourtree_augmented::IdArrayType supernodes;
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{
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ds.GetField("Supernodes").GetData().AsArrayHandle(supernodes);
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auto ds = result.GetPartition(ds_no);
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vtkm::worklet::contourtree_augmented::IdArrayType superarcs;
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std::string branchDecompositionFileName = std::string("BranchDecomposition_Rank_") +
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ds.GetField("Superarcs").GetData().AsArrayHandle(superarcs);
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std::to_string(static_cast<int>(rank)) + std::string("_Block_") +
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vtkm::worklet::contourtree_augmented::IdArrayType regularNodeGlobalIds;
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std::to_string(static_cast<int>(ds_no)) + std::string(".txt");
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ds.GetField("RegularNodeGlobalIds").GetData().AsArrayHandle(regularNodeGlobalIds);
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vtkm::Id totalVolume = globalSize[0] * globalSize[1] * globalSize[2];
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vtkm::worklet::contourtree_augmented::IdArrayType intrinsicVolume;
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ds.GetField("IntrinsicVolume").GetData().AsArrayHandle(intrinsicVolume);
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vtkm::worklet::contourtree_augmented::IdArrayType dependentVolume;
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ds.GetField("DependentVolume").GetData().AsArrayHandle(dependentVolume);
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std::string dumpVolumesString =
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std::ofstream treeStream(branchDecompositionFileName.c_str());
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vtkm::worklet::contourtree_distributed::HierarchicalContourTree<ValueType>::DumpVolumes(
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treeStream
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supernodes,
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<< vtkm::worklet::contourtree_distributed::HierarchicalVolumetricBranchDecomposer<
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superarcs,
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ValueType>::PrintBranches(ds);
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regularNodeGlobalIds,
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}
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totalVolume,
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}
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intrinsicVolume,
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else
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dependentVolume);
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{
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for (vtkm::Id ds_no = 0; ds_no < result.GetNumberOfPartitions(); ++ds_no)
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{
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auto ds = result.GetPartition(ds_no);
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vtkm::worklet::contourtree_augmented::IdArrayType supernodes;
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ds.GetField("Supernodes").GetData().AsArrayHandle(supernodes);
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vtkm::worklet::contourtree_augmented::IdArrayType superarcs;
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ds.GetField("Superarcs").GetData().AsArrayHandle(superarcs);
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vtkm::worklet::contourtree_augmented::IdArrayType regularNodeGlobalIds;
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ds.GetField("RegularNodeGlobalIds").GetData().AsArrayHandle(regularNodeGlobalIds);
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vtkm::Id totalVolume = globalSize[0] * globalSize[1] * globalSize[2];
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vtkm::worklet::contourtree_augmented::IdArrayType intrinsicVolume;
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ds.GetField("IntrinsicVolume").GetData().AsArrayHandle(intrinsicVolume);
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vtkm::worklet::contourtree_augmented::IdArrayType dependentVolume;
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ds.GetField("DependentVolume").GetData().AsArrayHandle(dependentVolume);
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std::string volumesFileName = std::string("TreeWithVolumes_Rank_") +
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std::string dumpVolumesString =
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std::to_string(static_cast<int>(rank)) + std::string("_Block_") +
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vtkm::worklet::contourtree_distributed::HierarchicalContourTree<ValueType>::DumpVolumes(
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std::to_string(static_cast<int>(ds_no)) + std::string(".txt");
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supernodes,
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std::ofstream treeStream(volumesFileName.c_str());
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superarcs,
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treeStream << dumpVolumesString;
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regularNodeGlobalIds,
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totalVolume,
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intrinsicVolume,
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dependentVolume);
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std::string volumesFileName = std::string("TreeWithVolumes_Rank_") +
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std::to_string(static_cast<int>(rank)) + std::string("_Block_") +
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std::to_string(static_cast<int>(ds_no)) + std::string(".txt");
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std::ofstream treeStream(volumesFileName.c_str());
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treeStream << dumpVolumesString;
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}
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}
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}
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}
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}
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else
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else
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44
examples/contour_tree_distributed/hact_test_branch_decomposition.sh
Executable file
44
examples/contour_tree_distributed/hact_test_branch_decomposition.sh
Executable file
@ -0,0 +1,44 @@
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#!/bin/sh
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||||||
|
GTCT_DIR=${GTCT_DIR:-${HOME}/devel/parallel-peak-pruning/ContourTree/SweepAndMergeSerial/out}
|
||||||
|
RED=""
|
||||||
|
GREEN=""
|
||||||
|
NC=""
|
||||||
|
if [ -t 1 ]; then
|
||||||
|
# If stdout is a terminal, color Pass and FAIL green and red, respectively
|
||||||
|
RED=$(tput setaf 1)
|
||||||
|
GREEN=$(tput setaf 2)
|
||||||
|
NC=$(tput sgr0)
|
||||||
|
fi
|
||||||
|
|
||||||
|
echo "Removing previously generated files"
|
||||||
|
rm *.log *.dat
|
||||||
|
|
||||||
|
echo "Copying target file "$1 "into current directory"
|
||||||
|
filename=${1##*/}
|
||||||
|
fileroot=${filename%.txt}
|
||||||
|
|
||||||
|
cp $1 ${filename}
|
||||||
|
|
||||||
|
echo "Splitting data into "$2" x "$2" parts"
|
||||||
|
./split_data_2d.py ${filename} $2
|
||||||
|
rm ${filename}
|
||||||
|
|
||||||
|
echo "Running HACT"
|
||||||
|
n_parts=$(($2*$2))
|
||||||
|
# mpirun -np 4 --oversubscribe ./ContourTree_Distributed --vtkm-device Any --preSplitFiles --saveOutputData --augmentHierarchicalTree --computeVolumeBranchDecomposition --numBlocks=${n_parts} ${fileroot}_part_%d_of_${n_parts}.txt
|
||||||
|
mpirun -np 2 --oversubscribe ./ContourTree_Distributed --vtkm-device Any --preSplitFiles --saveOutputData --augmentHierarchicalTree --computeVolumeBranchDecomposition --numBlocks=${n_parts} ${fileroot}_part_%d_of_${n_parts}.txt
|
||||||
|
rm ${fileroot}_part_*_of_${n_parts}.txt
|
||||||
|
|
||||||
|
echo "Compiling Outputs"
|
||||||
|
sort -u BranchDecomposition_Rank_*.txt > outsort${fileroot}_$2x$2.txt
|
||||||
|
cat outsort${fileroot}_$2x$2.txt | ./BranchCompiler | sort > bcompile${fileroot}_$2x$2.txt
|
||||||
|
rm BranchDecomposition_Rank_*.txt outsort${fileroot}_$2x$2.txt
|
||||||
|
|
||||||
|
echo "Diffing"
|
||||||
|
echo diff bcompile${fileroot}_$2x$2.txt ${GTCT_DIR}/branch_decomposition_volume_${fileroot}.txt
|
||||||
|
diff bcompile${fileroot}_$2x$2.txt ${GTCT_DIR}/branch_decomposition_volume_${fileroot}.txt
|
||||||
|
|
||||||
|
if test $? -eq 0; then echo "${GREEN}Pass${NC}"; rm bcompile${fileroot}_$2x$2.txt; else echo "${RED}FAIL${NC}"; fi;
|
||||||
|
|
||||||
|
# echo "Generating Dot files"
|
||||||
|
# ./makedot.sh
|
99
examples/contour_tree_distributed/testrun_branch_decomposition.sh
Executable file
99
examples/contour_tree_distributed/testrun_branch_decomposition.sh
Executable file
@ -0,0 +1,99 @@
|
|||||||
|
#!/bin/sh
|
||||||
|
|
||||||
|
mkdir -p out
|
||||||
|
DATA_DIR=${DATA_DIR:-${HOME}/devel/parallel-peak-pruning/Data/2D}
|
||||||
|
|
||||||
|
if [ ! -d $DATA_DIR ]; then
|
||||||
|
echo "Error: Directory $DATA_DIR does not exist!"
|
||||||
|
exit 1;
|
||||||
|
fi;
|
||||||
|
|
||||||
|
echo
|
||||||
|
echo "Starting Timing Runs"
|
||||||
|
echo
|
||||||
|
echo "8x9 Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/8x9test.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/8x9test.txt 4
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/8x9test.txt 8
|
||||||
|
echo
|
||||||
|
echo "Vancouver Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vanc.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vanc.txt 4
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vanc.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vanc.txt 16
|
||||||
|
echo
|
||||||
|
echo "Vancouver SWSW Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWSW.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWSW.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWSW.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWSW.txt 16
|
||||||
|
echo
|
||||||
|
echo "Vancouver SWNW Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWNW.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWNW.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWNW.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWNW.txt 16
|
||||||
|
echo
|
||||||
|
echo "Vancouver SWSE Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWSE.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWSE.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWSE.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWSE.txt 16
|
||||||
|
echo
|
||||||
|
echo "Vancouver SWNE Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWNE.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWNE.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWNE.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSWNE.txt 16
|
||||||
|
echo
|
||||||
|
echo "Vancouver NE Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverNE.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverNE.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverNE.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vancouverNE.txt 16
|
||||||
|
echo
|
||||||
|
echo "Vancouver NW Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverNW.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverNW.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverNW.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vancouverNW.txt 16
|
||||||
|
echo
|
||||||
|
echo "Vancouver SE Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSE.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSE.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSE.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSE.txt 16
|
||||||
|
echo
|
||||||
|
echo "Vancouver SW Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSW.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSW.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSW.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/vancouverSW.txt 16
|
||||||
|
echo
|
||||||
|
echo "Icefields Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/icefield.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/icefield.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/icefield.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/icefield.txt 16
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/icefield.txt 32
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/icefield.txt 64
|
||||||
|
echo
|
||||||
|
echo "GTOPO30 Full Tiny Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/gtopo_full_tiny.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/gtopo_full_tiny.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/gtopo_full_tiny.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo_full_tiny.txt 16
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo_full_tiny.txt 32
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo_full_tiny.txt 64
|
||||||
|
echo
|
||||||
|
echo "GTOPO30 UK Tile Test Set"
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 2
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 4
|
||||||
|
./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 8
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 16
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 32
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 64
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 128
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 256
|
||||||
|
# ./hact_test_branch_decomposition.sh $DATA_DIR/gtopo30w020n40.txt 512
|
||||||
|
echo "Done"
|
@ -119,6 +119,7 @@ public:
|
|||||||
bool useBoundaryExtremaOnly = true,
|
bool useBoundaryExtremaOnly = true,
|
||||||
bool useMarchingCubes = false,
|
bool useMarchingCubes = false,
|
||||||
bool augmentHierarchicalTree = false,
|
bool augmentHierarchicalTree = false,
|
||||||
|
bool computeHierarchicalVolumetricBranchDecomposition = false,
|
||||||
bool saveDotFiles = false,
|
bool saveDotFiles = false,
|
||||||
vtkm::cont::LogLevel timingsLogLevel = vtkm::cont::LogLevel::Perf,
|
vtkm::cont::LogLevel timingsLogLevel = vtkm::cont::LogLevel::Perf,
|
||||||
vtkm::cont::LogLevel treeLogLevel = vtkm::cont::LogLevel::Info);
|
vtkm::cont::LogLevel treeLogLevel = vtkm::cont::LogLevel::Info);
|
||||||
@ -165,12 +166,20 @@ public:
|
|||||||
|
|
||||||
template <typename FieldType>
|
template <typename FieldType>
|
||||||
VTKM_CONT void ComputeVolumeMetric(
|
VTKM_CONT void ComputeVolumeMetric(
|
||||||
vtkmdiy::Master& inputContoourTreeMaster,
|
vtkmdiy::Master& inputContourTreeMaster,
|
||||||
vtkmdiy::DynamicAssigner& assigner,
|
vtkmdiy::DynamicAssigner& assigner,
|
||||||
vtkmdiy::RegularSwapPartners& partners,
|
vtkmdiy::RegularSwapPartners& partners,
|
||||||
const FieldType&, // dummy parameter to get the type
|
const FieldType&, // dummy parameter to get the type
|
||||||
std::stringstream& timingsStream,
|
std::stringstream& timingsStream,
|
||||||
std::vector<vtkm::cont::DataSet> hierarchicalTreeOutputDataSet);
|
std::vector<vtkm::cont::DataSet>& hierarchicalTreeOutputDataSet);
|
||||||
|
|
||||||
|
template <typename FieldType>
|
||||||
|
VTKM_CONT void ComputeBranchDecomposition(vtkmdiy::Master& inputContourTreeMaster,
|
||||||
|
vtkmdiy::DynamicAssigner& assigner,
|
||||||
|
vtkmdiy::RegularSwapPartners& partners,
|
||||||
|
const FieldType&, // dummy parameter to get the type
|
||||||
|
std::stringstream& timingsStream,
|
||||||
|
std::vector<vtkm::cont::DataSet>& outputDataSet);
|
||||||
|
|
||||||
///
|
///
|
||||||
/// Internal helper function that implements the actual functionality of PostExecute
|
/// Internal helper function that implements the actual functionality of PostExecute
|
||||||
@ -196,6 +205,9 @@ private:
|
|||||||
/// Augment hierarchical tree
|
/// Augment hierarchical tree
|
||||||
bool AugmentHierarchicalTree;
|
bool AugmentHierarchicalTree;
|
||||||
|
|
||||||
|
/// Compute the hierarchical volumetric branch decomposition
|
||||||
|
bool ComputeHierarchicalVolumetricBranchDecomposition;
|
||||||
|
|
||||||
/// Save dot files for all tree computations
|
/// Save dot files for all tree computations
|
||||||
bool SaveDotFiles;
|
bool SaveDotFiles;
|
||||||
|
|
||||||
|
@ -66,12 +66,15 @@
|
|||||||
// distributed contour tree includes
|
// distributed contour tree includes
|
||||||
#include <vtkm/worklet/contourtree_distributed/BoundaryTree.h>
|
#include <vtkm/worklet/contourtree_distributed/BoundaryTree.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/BoundaryTreeMaker.h>
|
#include <vtkm/worklet/contourtree_distributed/BoundaryTreeMaker.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/BranchDecompositionBlock.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/CombineHyperSweepBlockFunctor.h>
|
#include <vtkm/worklet/contourtree_distributed/CombineHyperSweepBlockFunctor.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/ComputeDistributedBranchDecompositionFunctor.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/ComputeDistributedContourTreeFunctor.h>
|
#include <vtkm/worklet/contourtree_distributed/ComputeDistributedContourTreeFunctor.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/DistributedContourTreeBlockData.h>
|
#include <vtkm/worklet/contourtree_distributed/DistributedContourTreeBlockData.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/HierarchicalAugmenter.h>
|
#include <vtkm/worklet/contourtree_distributed/HierarchicalAugmenter.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/HierarchicalAugmenterFunctor.h>
|
#include <vtkm/worklet/contourtree_distributed/HierarchicalAugmenterFunctor.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/HierarchicalHyperSweeper.h>
|
#include <vtkm/worklet/contourtree_distributed/HierarchicalHyperSweeper.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/HierarchicalVolumetricBranchDecomposer.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/HyperSweepBlock.h>
|
#include <vtkm/worklet/contourtree_distributed/HyperSweepBlock.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/InteriorForest.h>
|
#include <vtkm/worklet/contourtree_distributed/InteriorForest.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/PrintGraph.h>
|
#include <vtkm/worklet/contourtree_distributed/PrintGraph.h>
|
||||||
@ -208,6 +211,7 @@ ContourTreeUniformDistributed::ContourTreeUniformDistributed(
|
|||||||
bool useBoundaryExtremaOnly,
|
bool useBoundaryExtremaOnly,
|
||||||
bool useMarchingCubes,
|
bool useMarchingCubes,
|
||||||
bool augmentHierarchicalTree,
|
bool augmentHierarchicalTree,
|
||||||
|
bool computeHierarchicalVolumetricBranchDecomposition,
|
||||||
bool saveDotFiles,
|
bool saveDotFiles,
|
||||||
vtkm::cont::LogLevel timingsLogLevel,
|
vtkm::cont::LogLevel timingsLogLevel,
|
||||||
vtkm::cont::LogLevel treeLogLevel)
|
vtkm::cont::LogLevel treeLogLevel)
|
||||||
@ -215,6 +219,8 @@ ContourTreeUniformDistributed::ContourTreeUniformDistributed(
|
|||||||
, UseBoundaryExtremaOnly(useBoundaryExtremaOnly)
|
, UseBoundaryExtremaOnly(useBoundaryExtremaOnly)
|
||||||
, UseMarchingCubes(useMarchingCubes)
|
, UseMarchingCubes(useMarchingCubes)
|
||||||
, AugmentHierarchicalTree(augmentHierarchicalTree)
|
, AugmentHierarchicalTree(augmentHierarchicalTree)
|
||||||
|
, ComputeHierarchicalVolumetricBranchDecomposition(
|
||||||
|
computeHierarchicalVolumetricBranchDecomposition)
|
||||||
, SaveDotFiles(saveDotFiles)
|
, SaveDotFiles(saveDotFiles)
|
||||||
, TimingsLogLevel(timingsLogLevel)
|
, TimingsLogLevel(timingsLogLevel)
|
||||||
, TreeLogLevel(treeLogLevel)
|
, TreeLogLevel(treeLogLevel)
|
||||||
@ -229,6 +235,13 @@ ContourTreeUniformDistributed::ContourTreeUniformDistributed(
|
|||||||
, LocalInteriorForests(static_cast<std::size_t>(localBlockSizes.GetNumberOfValues()))
|
, LocalInteriorForests(static_cast<std::size_t>(localBlockSizes.GetNumberOfValues()))
|
||||||
{
|
{
|
||||||
this->SetOutputFieldName("resultData");
|
this->SetOutputFieldName("resultData");
|
||||||
|
if (this->ComputeHierarchicalVolumetricBranchDecomposition && !this->AugmentHierarchicalTree)
|
||||||
|
{
|
||||||
|
this->AugmentHierarchicalTree = true;
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Error,
|
||||||
|
"Volumetric branch decmomposition requires augmentation. "
|
||||||
|
<< "Enabling the AugmentHierarchicalTree option.");
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
@ -626,12 +639,12 @@ inline VTKM_CONT void ContourTreeUniformDistributed::PostExecute(
|
|||||||
|
|
||||||
template <typename FieldType>
|
template <typename FieldType>
|
||||||
inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
||||||
vtkmdiy::Master& inputContoourTreeMaster,
|
vtkmdiy::Master& inputContourTreeMaster,
|
||||||
vtkmdiy::DynamicAssigner& assigner,
|
vtkmdiy::DynamicAssigner& assigner,
|
||||||
vtkmdiy::RegularSwapPartners& partners,
|
vtkmdiy::RegularSwapPartners& partners,
|
||||||
const FieldType&, // dummy parameter to get the type
|
const FieldType&, // dummy parameter to get the type
|
||||||
std::stringstream& timingsStream,
|
std::stringstream& timingsStream,
|
||||||
std::vector<vtkm::cont::DataSet> hierarchicalTreeOutputDataSet)
|
std::vector<vtkm::cont::DataSet>& hierarchicalTreeOutputDataSet)
|
||||||
{
|
{
|
||||||
// TODO/FIXME: CONSIDER MOVING CONTENTS OF THIS METHOD TO SEPARATE FILTER
|
// TODO/FIXME: CONSIDER MOVING CONTENTS OF THIS METHOD TO SEPARATE FILTER
|
||||||
vtkm::cont::Timer timer;
|
vtkm::cont::Timer timer;
|
||||||
@ -644,7 +657,7 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
1, // Use 1 thread, VTK-M will do the treading
|
1, // Use 1 thread, VTK-M will do the treading
|
||||||
-1, // All blocks in memory
|
-1, // All blocks in memory
|
||||||
0, // No create function
|
0, // No create function
|
||||||
HyperSweepBlock::destroy);
|
HyperSweepBlock::Destroy);
|
||||||
|
|
||||||
// Log the time to create the DIY master for the hyper sweep
|
// Log the time to create the DIY master for the hyper sweep
|
||||||
timingsStream << " " << std::setw(38) << std::left << "Create DIY Master (Hypersweep)"
|
timingsStream << " " << std::setw(38) << std::left << "Create DIY Master (Hypersweep)"
|
||||||
@ -654,7 +667,7 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
// Copy data from hierarchical tree computation to initialize volume computation
|
// Copy data from hierarchical tree computation to initialize volume computation
|
||||||
using DistributedContourTreeBlockData =
|
using DistributedContourTreeBlockData =
|
||||||
vtkm::worklet::contourtree_distributed::DistributedContourTreeBlockData<FieldType>;
|
vtkm::worklet::contourtree_distributed::DistributedContourTreeBlockData<FieldType>;
|
||||||
inputContoourTreeMaster.foreach (
|
inputContourTreeMaster.foreach (
|
||||||
[&](DistributedContourTreeBlockData* currInBlock, const vtkmdiy::Master::ProxyWithLink&) {
|
[&](DistributedContourTreeBlockData* currInBlock, const vtkmdiy::Master::ProxyWithLink&) {
|
||||||
vtkm::Id blockNo = currInBlock->LocalBlockNo;
|
vtkm::Id blockNo = currInBlock->LocalBlockNo;
|
||||||
// The block size and origin may be modified during the FanIn so we need to use the
|
// The block size and origin may be modified during the FanIn so we need to use the
|
||||||
@ -667,7 +680,7 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
// NOTE: Use dummy link to make DIY happy. The dummy link is never used, since all
|
// NOTE: Use dummy link to make DIY happy. The dummy link is never used, since all
|
||||||
// communication is via RegularDecomposer, which sets up its own links. No need
|
// communication is via RegularDecomposer, which sets up its own links. No need
|
||||||
// to keep the pointer, as DIY will "own" it and delete it when no longer needed.
|
// to keep the pointer, as DIY will "own" it and delete it when no longer needed.
|
||||||
// NOTE: Since we passed a "destroy" function to DIY master, it will own the local data
|
// NOTE: Since we passed a "Destroy" function to DIY master, it will own the local data
|
||||||
// blocks and delete them when done.
|
// blocks and delete them when done.
|
||||||
hierarchical_hyper_sweep_master.add(
|
hierarchical_hyper_sweep_master.add(
|
||||||
currInBlock->GlobalBlockId,
|
currInBlock->GlobalBlockId,
|
||||||
@ -680,13 +693,18 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
new vtkmdiy::Link());
|
new vtkmdiy::Link());
|
||||||
});
|
});
|
||||||
|
|
||||||
vtkmdiy::fix_links(hierarchical_hyper_sweep_master, assigner);
|
|
||||||
|
|
||||||
// Log time to copy the data to the HyperSweepBlock data objects
|
// Log time to copy the data to the HyperSweepBlock data objects
|
||||||
timingsStream << " " << std::setw(38) << std::left << "Initialize Hypersweep Data"
|
timingsStream << " " << std::setw(38) << std::left << "Initialize Hypersweep Data"
|
||||||
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
timer.Start();
|
timer.Start();
|
||||||
|
|
||||||
|
vtkmdiy::fix_links(hierarchical_hyper_sweep_master, assigner);
|
||||||
|
|
||||||
|
// Record time to fix the links
|
||||||
|
timingsStream << " " << std::setw(38) << std::left << "Fix DIY Links (Hypersweep)"
|
||||||
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
|
timer.Start();
|
||||||
|
|
||||||
hierarchical_hyper_sweep_master.foreach ([&](HyperSweepBlock* b,
|
hierarchical_hyper_sweep_master.foreach ([&](HyperSweepBlock* b,
|
||||||
const vtkmdiy::Master::ProxyWithLink&) {
|
const vtkmdiy::Master::ProxyWithLink&) {
|
||||||
std::stringstream localHypersweepTimingsStream;
|
std::stringstream localHypersweepTimingsStream;
|
||||||
@ -695,8 +713,8 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
|
|
||||||
// Create HyperSweeper
|
// Create HyperSweeper
|
||||||
#ifdef DEBUG_PRINT
|
#ifdef DEBUG_PRINT
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "Block " << b->GlobalBlockId);
|
VTKM_LOG_S(this->TreeLogLevel, "Block " << b->GlobalBlockId);
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info,
|
VTKM_LOG_S(this->TreeLogLevel,
|
||||||
b->HierarchicalContourTree.DebugPrint(
|
b->HierarchicalContourTree.DebugPrint(
|
||||||
"Before initializing HierarchicalHyperSweeper", __FILE__, __LINE__));
|
"Before initializing HierarchicalHyperSweeper", __FILE__, __LINE__));
|
||||||
#endif
|
#endif
|
||||||
@ -731,8 +749,8 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
}
|
}
|
||||||
|
|
||||||
#ifdef DEBUG_PRINT
|
#ifdef DEBUG_PRINT
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "Block " << b->GlobalBlockId);
|
VTKM_LOG_S(this->TreeLogLevel, "Block " << b->GlobalBlockId);
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info,
|
VTKM_LOG_S(this->TreeLogLevel,
|
||||||
b->HierarchicalContourTree.DebugPrint(
|
b->HierarchicalContourTree.DebugPrint(
|
||||||
"After initializing intrinsic vertex count", __FILE__, __LINE__));
|
"After initializing intrinsic vertex count", __FILE__, __LINE__));
|
||||||
std::ostringstream volumeStream;
|
std::ostringstream volumeStream;
|
||||||
@ -742,8 +760,8 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
"Intrinsic Volume", b->IntrinsicVolume, -1, volumeStream);
|
"Intrinsic Volume", b->IntrinsicVolume, -1, volumeStream);
|
||||||
vtkm::worklet::contourtree_augmented::PrintIndices(
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
"Dependent Volume", b->DependentVolume, -1, volumeStream);
|
"Dependent Volume", b->DependentVolume, -1, volumeStream);
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info, volumeStream.str());
|
VTKM_LOG_S(this->TreeLogLevel, volumeStream.str());
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "FLUSH" << std::endl << std::flush);
|
VTKM_LOG_S(this->TreeLogLevel, "FLUSH" << std::endl << std::flush);
|
||||||
#endif
|
#endif
|
||||||
// Initialize dependentVolume by copy from intrinsicVolume
|
// Initialize dependentVolume by copy from intrinsicVolume
|
||||||
vtkm::cont::Algorithm::Copy(b->IntrinsicVolume, b->DependentVolume);
|
vtkm::cont::Algorithm::Copy(b->IntrinsicVolume, b->DependentVolume);
|
||||||
@ -758,8 +776,8 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
hyperSweeper.LocalHyperSweep();
|
hyperSweeper.LocalHyperSweep();
|
||||||
|
|
||||||
#ifdef DEBUG_PRINT
|
#ifdef DEBUG_PRINT
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "Block " << b->GlobalBlockId);
|
VTKM_LOG_S(this->TreeLogLevel, "Block " << b->GlobalBlockId);
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info,
|
VTKM_LOG_S(this->TreeLogLevel,
|
||||||
b->HierarchicalContourTree.DebugPrint("After local hypersweep", __FILE__, __LINE__));
|
b->HierarchicalContourTree.DebugPrint("After local hypersweep", __FILE__, __LINE__));
|
||||||
#endif
|
#endif
|
||||||
// Log the local hypersweep time
|
// Log the local hypersweep time
|
||||||
@ -805,9 +823,9 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
"DependentVolume", vtkm::cont::Field::Association::WholeMesh, b->DependentVolume);
|
"DependentVolume", vtkm::cont::Field::Association::WholeMesh, b->DependentVolume);
|
||||||
hierarchicalTreeOutputDataSet[b->LocalBlockNo].AddField(dependentVolumeField);
|
hierarchicalTreeOutputDataSet[b->LocalBlockNo].AddField(dependentVolumeField);
|
||||||
#ifdef DEBUG_PRINT
|
#ifdef DEBUG_PRINT
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "Block " << b->GlobalBlockId);
|
VTKM_LOG_S(this->TreeLogLevel, "Block " << b->GlobalBlockId);
|
||||||
VTKM_LOG_S(
|
VTKM_LOG_S(
|
||||||
vtkm::cont::LogLevel::Info,
|
this->TreeLogLevel,
|
||||||
b->HierarchicalContourTree.DebugPrint("Called from DumpVolumes", __FILE__, __LINE__));
|
b->HierarchicalContourTree.DebugPrint("Called from DumpVolumes", __FILE__, __LINE__));
|
||||||
std::ostringstream volumeStream;
|
std::ostringstream volumeStream;
|
||||||
vtkm::worklet::contourtree_augmented::PrintHeader(b->IntrinsicVolume.GetNumberOfValues(),
|
vtkm::worklet::contourtree_augmented::PrintHeader(b->IntrinsicVolume.GetNumberOfValues(),
|
||||||
@ -816,15 +834,151 @@ inline VTKM_CONT void ContourTreeUniformDistributed::ComputeVolumeMetric(
|
|||||||
"Intrinsic Volume", b->IntrinsicVolume, -1, volumeStream);
|
"Intrinsic Volume", b->IntrinsicVolume, -1, volumeStream);
|
||||||
vtkm::worklet::contourtree_augmented::PrintIndices(
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
"Dependent Volume", b->DependentVolume, -1, volumeStream);
|
"Dependent Volume", b->DependentVolume, -1, volumeStream);
|
||||||
VTKM_LOG_S(vtkm::cont::LogLevel::Info, volumeStream.str());
|
VTKM_LOG_S(this->TreeLogLevel, volumeStream.str());
|
||||||
#endif
|
#endif
|
||||||
// Log the time for adding hypersweep data to the output dataset
|
// Log the time for adding hypersweep data to the output dataset
|
||||||
timingsStream << " " << std::setw(38) << std::left << "Create Output Data (Hypersweep)"
|
timingsStream << " " << std::setw(38) << std::left << "Create Output Data (Hypersweep)"
|
||||||
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
timer.Start();
|
|
||||||
});
|
});
|
||||||
}
|
}
|
||||||
|
|
||||||
|
//-----------------------------------------------------------------------------
|
||||||
|
template <typename FieldType>
|
||||||
|
inline VTKM_CONT void ContourTreeUniformDistributed::ComputeBranchDecomposition(
|
||||||
|
vtkmdiy::Master& inputContourTreeMaster,
|
||||||
|
vtkmdiy::DynamicAssigner& assigner,
|
||||||
|
vtkmdiy::RegularSwapPartners& partners,
|
||||||
|
const FieldType&, // dummy parameter to get the type
|
||||||
|
std::stringstream& timingsStream,
|
||||||
|
std::vector<vtkm::cont::DataSet>& outputDataSet)
|
||||||
|
{
|
||||||
|
vtkm::cont::Timer timer;
|
||||||
|
timer.Start();
|
||||||
|
|
||||||
|
using BranchDecompositionBlock =
|
||||||
|
vtkm::worklet::contourtree_distributed::BranchDecompositionBlock<FieldType>;
|
||||||
|
|
||||||
|
auto comm = vtkm::cont::EnvironmentTracker::GetCommunicator();
|
||||||
|
vtkmdiy::Master branch_decomposition_master(comm,
|
||||||
|
1, // Use 1 thread, VTK-M will do the treading
|
||||||
|
-1, // All blocks in memory
|
||||||
|
0, // No create function
|
||||||
|
BranchDecompositionBlock::Destroy);
|
||||||
|
|
||||||
|
// Log the time to create the DIY master for the hyper sweep
|
||||||
|
timingsStream << " " << std::setw(38) << std::left
|
||||||
|
<< "Create DIY Master (Branch Decomposition):" << timer.GetElapsedTime()
|
||||||
|
<< " seconds" << std::endl;
|
||||||
|
timer.Start();
|
||||||
|
|
||||||
|
// Copy data from hierarchical hypersweep to initialize branch decomposition computation
|
||||||
|
using DistributedContourTreeBlockData =
|
||||||
|
vtkm::worklet::contourtree_distributed::DistributedContourTreeBlockData<FieldType>;
|
||||||
|
inputContourTreeMaster.foreach (
|
||||||
|
[&](DistributedContourTreeBlockData* currInBlock, const vtkmdiy::Master::ProxyWithLink&) {
|
||||||
|
BranchDecompositionBlock* newBlock = new BranchDecompositionBlock(
|
||||||
|
currInBlock->LocalBlockNo, currInBlock->GlobalBlockId, currInBlock->AugmentedTree);
|
||||||
|
// NOTE: Use dummy link to make DIY happy. The dummy link is never used, since all
|
||||||
|
// communication is via RegularDecomposer, which sets up its own links. No need
|
||||||
|
// to keep the pointer, as DIY will "own" it and delete it when no longer needed.
|
||||||
|
// NOTE: Since we passed a "Destroy" function to DIY master, it will own the local data
|
||||||
|
// blocks and delete them when done.
|
||||||
|
branch_decomposition_master.add(currInBlock->GlobalBlockId, newBlock, new vtkmdiy::Link());
|
||||||
|
});
|
||||||
|
|
||||||
|
// Log time to copy the data to the HyperSweepBlock data objects
|
||||||
|
timingsStream << " " << std::setw(38) << std::left << "Initialize Branch Decomposition Data"
|
||||||
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
|
timer.Start();
|
||||||
|
|
||||||
|
vtkmdiy::fix_links(branch_decomposition_master, assigner);
|
||||||
|
|
||||||
|
// Record time to fix the links
|
||||||
|
timingsStream << " " << std::setw(38) << std::left << "Fix DIY Links (Branch Decomposition)"
|
||||||
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
|
timer.Start();
|
||||||
|
|
||||||
|
branch_decomposition_master.foreach (
|
||||||
|
[&](BranchDecompositionBlock* b, const vtkmdiy::Master::ProxyWithLink&) {
|
||||||
|
// Get intrinsic and dependent volume from data set
|
||||||
|
vtkm::cont::DataSet ds = outputDataSet[b->LocalBlockNo];
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> intrinsicVolume =
|
||||||
|
ds.GetField("IntrinsicVolume").GetData().AsArrayHandle<vtkm::cont::ArrayHandle<vtkm::Id>>();
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> dependentVolume =
|
||||||
|
ds.GetField("DependentVolume").GetData().AsArrayHandle<vtkm::cont::ArrayHandle<vtkm::Id>>();
|
||||||
|
|
||||||
|
// Get global size and compute total volume from it
|
||||||
|
const auto& globalSize = this->MultiBlockSpatialDecomposition.GlobalSize;
|
||||||
|
vtkm::Id totalVolume = globalSize[0] * globalSize[1] * globalSize[2];
|
||||||
|
|
||||||
|
// Compute local best up and down paths by volume
|
||||||
|
b->HierarchicalVolumetricBranchDecomposer.LocalBestUpDownByVolume(
|
||||||
|
&b->HierarchicalContourTree, intrinsicVolume, dependentVolume, totalVolume);
|
||||||
|
|
||||||
|
#ifdef DEBUG_PRINT
|
||||||
|
VTKM_LOG_S(this->TreeLogLevel, "Before reduction");
|
||||||
|
{
|
||||||
|
std::stringstream rs;
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(
|
||||||
|
b->HierarchicalVolumetricBranchDecomposer.BestUpSupernode.GetNumberOfValues(), rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"BestUpSupernode", b->HierarchicalVolumetricBranchDecomposer.BestUpSupernode, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"BestDownSupernode", b->HierarchicalVolumetricBranchDecomposer.BestDownSupernode, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"BestUpVolume", b->HierarchicalVolumetricBranchDecomposer.BestUpVolume, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"BestDownVolume", b->HierarchicalVolumetricBranchDecomposer.BestDownVolume, -1, rs);
|
||||||
|
VTKM_LOG_S(this->TreeLogLevel, rs.str());
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
});
|
||||||
|
|
||||||
|
timingsStream << " " << std::setw(38) << std::left << "LocalBestUpDownByVolume"
|
||||||
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
|
timer.Start();
|
||||||
|
|
||||||
|
// Reduce
|
||||||
|
// partners for merge over regular block grid
|
||||||
|
vtkmdiy::reduce(
|
||||||
|
branch_decomposition_master,
|
||||||
|
assigner,
|
||||||
|
partners,
|
||||||
|
vtkm::worklet::contourtree_distributed::ComputeDistributedBranchDecompositionFunctor<
|
||||||
|
FieldType>{});
|
||||||
|
|
||||||
|
timingsStream << " " << std::setw(38) << std::left
|
||||||
|
<< "Exchanging best up/down supernode and volume"
|
||||||
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
|
timer.Start();
|
||||||
|
|
||||||
|
branch_decomposition_master.foreach (
|
||||||
|
[&](BranchDecompositionBlock* b, const vtkmdiy::Master::ProxyWithLink&) {
|
||||||
|
b->HierarchicalVolumetricBranchDecomposer.CollapseBranches(&b->HierarchicalContourTree,
|
||||||
|
b->BranchRoots);
|
||||||
|
});
|
||||||
|
|
||||||
|
timingsStream << " " << std::setw(38) << std::left << "CollapseBranches"
|
||||||
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
|
timer.Start();
|
||||||
|
|
||||||
|
branch_decomposition_master.foreach ([&](BranchDecompositionBlock* b,
|
||||||
|
const vtkmdiy::Master::ProxyWithLink&) {
|
||||||
|
#ifdef DEBUG_PRINT
|
||||||
|
VTKM_LOG_S(this->TreeLogLevel,
|
||||||
|
b->HierarchicalVolumetricBranchDecomposer.PrintBranches(&b->HierarchicalContourTree,
|
||||||
|
b->BranchRoots));
|
||||||
|
#endif
|
||||||
|
vtkm::cont::Field branchRootField(
|
||||||
|
"BranchRoots", vtkm::cont::Field::Association::WholeMesh, b->BranchRoots);
|
||||||
|
outputDataSet[b->LocalBlockNo].AddField(branchRootField);
|
||||||
|
});
|
||||||
|
|
||||||
|
timingsStream << " " << std::setw(38) << std::left
|
||||||
|
<< "Creating Branch Decomposition Output Data"
|
||||||
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
|
timer.Start();
|
||||||
|
}
|
||||||
|
|
||||||
//-----------------------------------------------------------------------------
|
//-----------------------------------------------------------------------------
|
||||||
template <typename FieldType, typename StorageType, typename DerivedPolicy>
|
template <typename FieldType, typename StorageType, typename DerivedPolicy>
|
||||||
@ -854,10 +1008,11 @@ VTKM_CONT void ContourTreeUniformDistributed::DoPostExecute(
|
|||||||
1, // Use 1 thread, VTK-M will do the treading
|
1, // Use 1 thread, VTK-M will do the treading
|
||||||
-1, // All blocks in memory
|
-1, // All blocks in memory
|
||||||
0, // No create function (since all blocks in memory)
|
0, // No create function (since all blocks in memory)
|
||||||
DistributedContourTreeBlockData::destroy);
|
DistributedContourTreeBlockData::Destroy);
|
||||||
|
|
||||||
// ... and record time for creating the DIY master
|
// ... and record time for creating the DIY master
|
||||||
timingsStream << " " << std::setw(38) << std::left << "Create DIY Master"
|
timingsStream << " " << std::setw(38) << std::left
|
||||||
|
<< "Create DIY Master (Distributed Contour Tree)"
|
||||||
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
timer.Start();
|
timer.Start();
|
||||||
|
|
||||||
@ -946,7 +1101,7 @@ VTKM_CONT void ContourTreeUniformDistributed::DoPostExecute(
|
|||||||
// NOTE: Use dummy link to make DIY happy. The dummy link is never used, since all
|
// NOTE: Use dummy link to make DIY happy. The dummy link is never used, since all
|
||||||
// communication is via RegularDecomposer, which sets up its own links. No need
|
// communication is via RegularDecomposer, which sets up its own links. No need
|
||||||
// to keep the pointer, as DIY will "own" it and delete it when no longer needed.
|
// to keep the pointer, as DIY will "own" it and delete it when no longer needed.
|
||||||
// NOTE: Since we passed a "destroy" function to DIY master, it will own the local data
|
// NOTE: Since we passed a "Destroy" function to DIY master, it will own the local data
|
||||||
// blocks and delete them when done.
|
// blocks and delete them when done.
|
||||||
master.add(vtkmdiyLocalBlockGids[bi], newBlock, new vtkmdiy::Link);
|
master.add(vtkmdiyLocalBlockGids[bi], newBlock, new vtkmdiy::Link);
|
||||||
} // for
|
} // for
|
||||||
@ -1020,7 +1175,8 @@ VTKM_CONT void ContourTreeUniformDistributed::DoPostExecute(
|
|||||||
vtkmdiy::fix_links(master, assigner);
|
vtkmdiy::fix_links(master, assigner);
|
||||||
|
|
||||||
// Record time to fix the links
|
// Record time to fix the links
|
||||||
timingsStream << " " << std::setw(38) << std::left << "Fix DIY Links"
|
timingsStream << " " << std::setw(38) << std::left
|
||||||
|
<< "Fix DIY Links (Distributed Contour Tree)"
|
||||||
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
<< ": " << timer.GetElapsedTime() << " seconds" << std::endl;
|
||||||
timer.Start();
|
timer.Start();
|
||||||
|
|
||||||
@ -1192,7 +1348,7 @@ VTKM_CONT void ContourTreeUniformDistributed::DoPostExecute(
|
|||||||
timer.Start();
|
timer.Start();
|
||||||
}
|
}
|
||||||
|
|
||||||
// ******** 4. Create output data set ********
|
// ******** 5. Create output data set ********
|
||||||
std::vector<vtkm::cont::DataSet> hierarchicalTreeOutputDataSet(master.size());
|
std::vector<vtkm::cont::DataSet> hierarchicalTreeOutputDataSet(master.size());
|
||||||
master.foreach (
|
master.foreach (
|
||||||
[&](DistributedContourTreeBlockData* blockData, const vtkmdiy::Master::ProxyWithLink&) {
|
[&](DistributedContourTreeBlockData* blockData, const vtkmdiy::Master::ProxyWithLink&) {
|
||||||
@ -1277,6 +1433,12 @@ VTKM_CONT void ContourTreeUniformDistributed::DoPostExecute(
|
|||||||
master, assigner, partners, FieldType{}, timingsStream, hierarchicalTreeOutputDataSet);
|
master, assigner, partners, FieldType{}, timingsStream, hierarchicalTreeOutputDataSet);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
if (this->ComputeHierarchicalVolumetricBranchDecomposition)
|
||||||
|
{
|
||||||
|
this->ComputeBranchDecomposition(
|
||||||
|
master, assigner, partners, FieldType{}, timingsStream, hierarchicalTreeOutputDataSet);
|
||||||
|
}
|
||||||
|
|
||||||
VTKM_LOG_S(this->TimingsLogLevel,
|
VTKM_LOG_S(this->TimingsLogLevel,
|
||||||
std::endl
|
std::endl
|
||||||
<< " ------------ DoPostExecute Timings ------------" << std::endl
|
<< " ------------ DoPostExecute Timings ------------" << std::endl
|
||||||
|
@ -292,8 +292,9 @@ inline vtkm::cont::PartitionedDataSet RunContourTreeDUniformDistributed(
|
|||||||
// work when only using boundary extrema
|
// work when only using boundary extrema
|
||||||
!useMarchingCubes,
|
!useMarchingCubes,
|
||||||
useMarchingCubes,
|
useMarchingCubes,
|
||||||
false,
|
false, // no augmentationa
|
||||||
false,
|
false, // no branch decmompostion
|
||||||
|
false, // no save dot
|
||||||
vtkm::cont::LogLevel::UserVerboseLast,
|
vtkm::cont::LogLevel::UserVerboseLast,
|
||||||
vtkm::cont::LogLevel::UserVerboseLast);
|
vtkm::cont::LogLevel::UserVerboseLast);
|
||||||
filter.SetActiveField(fieldName);
|
filter.SetActiveField(fieldName);
|
||||||
|
107
vtkm/worklet/contourtree_distributed/BranchDecompositionBlock.h
Normal file
107
vtkm/worklet/contourtree_distributed/BranchDecompositionBlock.h
Normal file
@ -0,0 +1,107 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
//
|
||||||
|
// This code is an extension of the algorithm presented in the paper:
|
||||||
|
// Parallel Peak Pruning for Scalable SMP Contour Tree Computation.
|
||||||
|
// Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
|
||||||
|
// Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
|
||||||
|
// (LDAV), October 2016, Baltimore, Maryland.
|
||||||
|
//
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_branchdecompositionblock_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_branchdecompositionblock_h
|
||||||
|
|
||||||
|
#include <vtkm/worklet/contourtree/Types.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/HierarchicalContourTree.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/HierarchicalVolumetricBranchDecomposer.h>
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
|
||||||
|
template <typename ContourTreeDataFieldType>
|
||||||
|
struct BranchDecompositionBlock
|
||||||
|
{
|
||||||
|
BranchDecompositionBlock(
|
||||||
|
vtkm::Id localBlockNo,
|
||||||
|
int globalBlockId,
|
||||||
|
const vtkm::worklet::contourtree_distributed::HierarchicalContourTree<ContourTreeDataFieldType>&
|
||||||
|
hierarchicalContourTree)
|
||||||
|
: LocalBlockNo(localBlockNo)
|
||||||
|
, GlobalBlockId(globalBlockId)
|
||||||
|
, HierarchicalContourTree(hierarchicalContourTree)
|
||||||
|
{
|
||||||
|
// Import/alias for readability
|
||||||
|
using vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
|
||||||
|
const vtkm::Id nSupernodes = HierarchicalContourTree.Supernodes.GetNumberOfValues();
|
||||||
|
//VTKM_LOG_S(vtkm::cont::LogLevel::Info, "Allocating " << nSupernodes << " valies in BranchRoots");
|
||||||
|
BranchRoots.AllocateAndFill(nSupernodes, NO_SUCH_ELEMENT);
|
||||||
|
}
|
||||||
|
|
||||||
|
// Block metadata TODO/FIXME: Check whether really needed
|
||||||
|
vtkm::Id LocalBlockNo;
|
||||||
|
int GlobalBlockId;
|
||||||
|
|
||||||
|
const vtkm::worklet::contourtree_distributed::HierarchicalContourTree<ContourTreeDataFieldType>&
|
||||||
|
HierarchicalContourTree;
|
||||||
|
vtkm::worklet::contourtree_distributed::HierarchicalVolumetricBranchDecomposer<
|
||||||
|
ContourTreeDataFieldType>
|
||||||
|
HierarchicalVolumetricBranchDecomposer;
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> BranchRoots;
|
||||||
|
|
||||||
|
// Destroy function allowing DIY to own blocks and clean them up after use
|
||||||
|
static void Destroy(void* b)
|
||||||
|
{
|
||||||
|
delete static_cast<BranchDecompositionBlock<ContourTreeDataFieldType>*>(b);
|
||||||
|
}
|
||||||
|
};
|
||||||
|
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
#endif
|
@ -11,12 +11,15 @@
|
|||||||
set(headers
|
set(headers
|
||||||
BoundaryTree.h
|
BoundaryTree.h
|
||||||
BoundaryTreeMaker.h
|
BoundaryTreeMaker.h
|
||||||
|
BranchDecompositionBlock.h
|
||||||
CombineHyperSweepBlockFunctor.h
|
CombineHyperSweepBlockFunctor.h
|
||||||
|
ComputeDistributedBranchDecompositionFunctor.h
|
||||||
ComputeDistributedContourTreeFunctor.h
|
ComputeDistributedContourTreeFunctor.h
|
||||||
ContourTreeBlockData.h
|
ContourTreeBlockData.h
|
||||||
DistributedContourTreeBlockData.h
|
DistributedContourTreeBlockData.h
|
||||||
HierarchicalAugmenter.h
|
HierarchicalAugmenter.h
|
||||||
HierarchicalAugmenterFunctor.h
|
HierarchicalAugmenterFunctor.h
|
||||||
|
HierarchicalVolumetricBranchDecomposer.h
|
||||||
HierarchicalContourTree.h
|
HierarchicalContourTree.h
|
||||||
HierarchicalHyperSweeper.h
|
HierarchicalHyperSweeper.h
|
||||||
HyperSweepBlock.h
|
HyperSweepBlock.h
|
||||||
@ -36,3 +39,4 @@ add_subdirectory(tree_grafter)
|
|||||||
add_subdirectory(hierarchical_contour_tree)
|
add_subdirectory(hierarchical_contour_tree)
|
||||||
add_subdirectory(hierarchical_hyper_sweeper)
|
add_subdirectory(hierarchical_hyper_sweeper)
|
||||||
add_subdirectory(hierarchical_augmenter)
|
add_subdirectory(hierarchical_augmenter)
|
||||||
|
add_subdirectory(hierarchical_volumetric_branch_decomposer)
|
||||||
|
@ -123,7 +123,7 @@ struct CobmineHyperSweepBlockFunctor
|
|||||||
// TODO/FIXME: Is there a way to do an in-place transform without a temporary array?
|
// TODO/FIXME: Is there a way to do an in-place transform without a temporary array?
|
||||||
vtkm::cont::Algorithm::Transform(
|
vtkm::cont::Algorithm::Transform(
|
||||||
intrinsicVolumeView, incomingIntrinsicVolume, tempSum, vtkm::Sum());
|
intrinsicVolumeView, incomingIntrinsicVolume, tempSum, vtkm::Sum());
|
||||||
vtkm::cont::Algorithm::Copy(tempSum, intrinsicVolumeView);
|
vtkm::cont::ArrayCopy(tempSum, intrinsicVolumeView);
|
||||||
|
|
||||||
auto dependentVolumeView =
|
auto dependentVolumeView =
|
||||||
make_ArrayHandleView(b->DependentVolume, 0, numSupernodesToProcess);
|
make_ArrayHandleView(b->DependentVolume, 0, numSupernodesToProcess);
|
||||||
@ -132,7 +132,7 @@ struct CobmineHyperSweepBlockFunctor
|
|||||||
// TODO/FIXME: Is there a way to do an in-place transform without a temporary array?
|
// TODO/FIXME: Is there a way to do an in-place transform without a temporary array?
|
||||||
vtkm::cont::Algorithm::Transform(
|
vtkm::cont::Algorithm::Transform(
|
||||||
dependentVolumeView, incomingDependentVolume, tempSum, vtkm::Sum());
|
dependentVolumeView, incomingDependentVolume, tempSum, vtkm::Sum());
|
||||||
vtkm::cont::Algorithm::Copy(tempSum, dependentVolumeView);
|
vtkm::cont::ArrayCopy(tempSum, dependentVolumeView);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@ -156,9 +156,9 @@ struct CobmineHyperSweepBlockFunctor
|
|||||||
// without copy. enqueue does not accept ArrayHandleView as input as it
|
// without copy. enqueue does not accept ArrayHandleView as input as it
|
||||||
// is not trivially copyable
|
// is not trivially copyable
|
||||||
vtkm::cont::ArrayHandle<vtkm::Id> sendIntrinsicVolume;
|
vtkm::cont::ArrayHandle<vtkm::Id> sendIntrinsicVolume;
|
||||||
vtkm::cont::Algorithm::Copy(intrinsicVolumeView, sendIntrinsicVolume);
|
vtkm::cont::ArrayCopy(intrinsicVolumeView, sendIntrinsicVolume);
|
||||||
vtkm::cont::ArrayHandle<vtkm::Id> sendDependentVolume;
|
vtkm::cont::ArrayHandle<vtkm::Id> sendDependentVolume;
|
||||||
vtkm::cont::Algorithm::Copy(dependentVolumeView, sendDependentVolume);
|
vtkm::cont::ArrayCopy(dependentVolumeView, sendDependentVolume);
|
||||||
|
|
||||||
// Send necessary data portions
|
// Send necessary data portions
|
||||||
rp.enqueue(target, sendIntrinsicVolume);
|
rp.enqueue(target, sendIntrinsicVolume);
|
||||||
|
@ -0,0 +1,238 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
//
|
||||||
|
// This code is an extension of the algorithm presented in the paper:
|
||||||
|
// Parallel Peak Pruning for Scalable SMP Contour Tree Computation.
|
||||||
|
// Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
|
||||||
|
// Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
|
||||||
|
// (LDAV), October 2016, Baltimore, Maryland.
|
||||||
|
//
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed__h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed__h
|
||||||
|
|
||||||
|
#include <vtkm/Types.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/BranchDecompositionBlock.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/FindBestSupernodeWorklet.h>
|
||||||
|
|
||||||
|
// clang-format off
|
||||||
|
VTKM_THIRDPARTY_PRE_INCLUDE
|
||||||
|
#include <vtkm/thirdparty/diy/diy.h>
|
||||||
|
VTKM_THIRDPARTY_POST_INCLUDE
|
||||||
|
// clang-format on
|
||||||
|
|
||||||
|
#ifdef DEBUG_PRINT
|
||||||
|
#define DEBUG_PRINT_COMBINED_BLOCK_IDS
|
||||||
|
#endif
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
|
||||||
|
template <typename ContourTreeDataFieldType>
|
||||||
|
struct ComputeDistributedBranchDecompositionFunctor
|
||||||
|
{
|
||||||
|
void operator()(
|
||||||
|
vtkm::worklet::contourtree_distributed::BranchDecompositionBlock<ContourTreeDataFieldType>* b,
|
||||||
|
const vtkmdiy::ReduceProxy& rp, // communication proxy
|
||||||
|
const vtkmdiy::RegularSwapPartners& // partners of the current block (unused)
|
||||||
|
) const
|
||||||
|
{
|
||||||
|
// Get our rank and DIY id
|
||||||
|
//const vtkm::Id rank = vtkm::cont::EnvironmentTracker::GetCommunicator().rank();
|
||||||
|
const auto selfid = rp.gid();
|
||||||
|
|
||||||
|
// Aliases to reduce verbosity
|
||||||
|
auto& branchDecomposer = b->HierarchicalVolumetricBranchDecomposer;
|
||||||
|
|
||||||
|
std::vector<int> incoming;
|
||||||
|
rp.incoming(incoming);
|
||||||
|
for (const int ingid : incoming)
|
||||||
|
{
|
||||||
|
// NOTE/IMPORTANT: In each round we should have only one swap partner (despite for-loop here).
|
||||||
|
// If that assumption does not hold, it will break things.
|
||||||
|
// NOTE/IMPORTANT: This assumption only holds if the number of blocks is a power of two.
|
||||||
|
// Otherwise, we may need to process more than one incoming block
|
||||||
|
if (ingid != selfid)
|
||||||
|
{
|
||||||
|
#ifdef DEBUG_PRINT_COMBINED_BLOCK_IDS
|
||||||
|
int incomingGlobalBlockId;
|
||||||
|
rp.dequeue(ingid, incomingGlobalBlockId);
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info,
|
||||||
|
"Combining local block " << b->GlobalBlockId << " with incomoing block "
|
||||||
|
<< incomingGlobalBlockId);
|
||||||
|
#endif
|
||||||
|
|
||||||
|
// Receive data from swap partner
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> incomingBestUpVolume;
|
||||||
|
rp.dequeue(ingid, incomingBestUpVolume);
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> incomingBestUpSupernode;
|
||||||
|
rp.dequeue(ingid, incomingBestUpSupernode);
|
||||||
|
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> incomingBestDownVolume;
|
||||||
|
rp.dequeue(ingid, incomingBestDownVolume);
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> incomingBestDownSupernode;
|
||||||
|
rp.dequeue(ingid, incomingBestDownSupernode);
|
||||||
|
|
||||||
|
vtkm::Id prefixLength = vtkm::cont::ArrayGetValue(
|
||||||
|
0, b->HierarchicalContourTree.FirstSupernodePerIteration[rp.round() - 1]);
|
||||||
|
|
||||||
|
#ifdef DEBUG_PRINT
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "Prefix length is " << prefixLength);
|
||||||
|
{
|
||||||
|
std::stringstream rs;
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(
|
||||||
|
incomingBestUpSupernode.GetNumberOfValues(), rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"incomingBestUpSupernode", incomingBestUpSupernode, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"incomingBestDownSupernode", incomingBestDownSupernode, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"incomingBestUpVolume", incomingBestUpVolume, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"incomingBestDownVolume", incomingBestDownVolume, -1, rs);
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, rs.str());
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
// NOTE: We are processing input data from the previous round, hence, get
|
||||||
|
// first supernide per ieteration from previous round
|
||||||
|
|
||||||
|
// Create 'views' to restrict worklet to relevant portion of arrays
|
||||||
|
auto bestUpVolumeView =
|
||||||
|
make_ArrayHandleView(branchDecomposer.BestUpVolume, 0, prefixLength);
|
||||||
|
auto bestUpSupernodeView =
|
||||||
|
make_ArrayHandleView(branchDecomposer.BestUpSupernode, 0, prefixLength);
|
||||||
|
auto bestDownVolumeView =
|
||||||
|
make_ArrayHandleView(branchDecomposer.BestDownVolume, 0, prefixLength);
|
||||||
|
auto bestDownSupernodeView =
|
||||||
|
make_ArrayHandleView(branchDecomposer.BestDownSupernode, 0, prefixLength);
|
||||||
|
|
||||||
|
// Check if swap partner knows a better up /down and update
|
||||||
|
vtkm::cont::Invoker invoke;
|
||||||
|
invoke(vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
FindBestSupernodeWorklet<true>{},
|
||||||
|
incomingBestUpVolume,
|
||||||
|
incomingBestUpSupernode,
|
||||||
|
bestUpVolumeView,
|
||||||
|
bestUpSupernodeView);
|
||||||
|
|
||||||
|
invoke(vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
FindBestSupernodeWorklet<false>{},
|
||||||
|
incomingBestDownVolume,
|
||||||
|
incomingBestDownSupernode,
|
||||||
|
bestDownVolumeView,
|
||||||
|
bestDownSupernodeView);
|
||||||
|
|
||||||
|
#ifdef DEBUG_PRINT
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "After round " << rp.round() - 1);
|
||||||
|
{
|
||||||
|
std::stringstream rs;
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(
|
||||||
|
branchDecomposer.BestUpSupernode.GetNumberOfValues(), rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"BestUpSupernode", branchDecomposer.BestUpSupernode, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"BestDownSupernode", branchDecomposer.BestDownSupernode, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"BestUpVolume", branchDecomposer.BestUpVolume, -1, rs);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"BestDownVolume", branchDecomposer.BestDownVolume, -1, rs);
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, rs.str());
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
for (int cc = 0; cc < rp.out_link().size(); ++cc)
|
||||||
|
{
|
||||||
|
auto target = rp.out_link().target(cc);
|
||||||
|
if (target.gid != selfid)
|
||||||
|
{
|
||||||
|
#ifdef DEBUG_PRINT_COMBINED_BLOCK_IDS
|
||||||
|
rp.enqueue(target, b->GlobalBlockId);
|
||||||
|
#endif
|
||||||
|
// Determine which portion of up/down volume/supernode to send
|
||||||
|
vtkm::Id prefixLength = vtkm::cont::ArrayGetValue(
|
||||||
|
0, b->HierarchicalContourTree.FirstSupernodePerIteration[rp.round()]);
|
||||||
|
|
||||||
|
// Create 'views' to restrict sending to relevant portion of arrays
|
||||||
|
auto bestUpVolumeView =
|
||||||
|
make_ArrayHandleView(branchDecomposer.BestUpVolume, 0, prefixLength);
|
||||||
|
auto bestUpSupernodeView =
|
||||||
|
make_ArrayHandleView(branchDecomposer.BestUpSupernode, 0, prefixLength);
|
||||||
|
auto bestDownVolumeView =
|
||||||
|
make_ArrayHandleView(branchDecomposer.BestDownVolume, 0, prefixLength);
|
||||||
|
auto bestDownSupernodeView =
|
||||||
|
make_ArrayHandleView(branchDecomposer.BestDownSupernode, 0, prefixLength);
|
||||||
|
|
||||||
|
// TODO/FIXME: Check if it is possible to send a portion of the arrays
|
||||||
|
// without copy. enqueue does not accept ArrayHandleView as input as it
|
||||||
|
// is not trivially copyable
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> sendBestUpVolume;
|
||||||
|
vtkm::cont::Algorithm::Copy(bestUpVolumeView, sendBestUpVolume);
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> sendBestUpSupernode;
|
||||||
|
vtkm::cont::Algorithm::Copy(bestUpSupernodeView, sendBestUpSupernode);
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> sendBestDownVolume;
|
||||||
|
vtkm::cont::Algorithm::Copy(bestDownVolumeView, sendBestDownVolume);
|
||||||
|
vtkm::cont::ArrayHandle<vtkm::Id> sendBestDownSupernode;
|
||||||
|
vtkm::cont::Algorithm::Copy(bestDownSupernodeView, sendBestDownSupernode);
|
||||||
|
|
||||||
|
rp.enqueue(target, sendBestUpVolume);
|
||||||
|
rp.enqueue(target, sendBestUpSupernode);
|
||||||
|
rp.enqueue(target, sendBestDownVolume);
|
||||||
|
rp.enqueue(target, sendBestDownSupernode);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
};
|
||||||
|
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
@ -177,11 +177,11 @@ public:
|
|||||||
// save the corresponding .gv file for the contour tree mesh
|
// save the corresponding .gv file for the contour tree mesh
|
||||||
std::string contourTreeMeshFileName = std::string("Rank_") +
|
std::string contourTreeMeshFileName = std::string("Rank_") +
|
||||||
std::to_string(static_cast<int>(rank)) + std::string("_Block_") +
|
std::to_string(static_cast<int>(rank)) + std::string("_Block_") +
|
||||||
std::to_string(static_cast<int>(block->BlockIndex)) + "_Round_" +
|
std::to_string(static_cast<int>(block->LocalBlockNo)) + "_Round_" +
|
||||||
std::to_string(rp.round()) + "_Partner_" + std::to_string(ingid) +
|
std::to_string(rp.round()) + "_Partner_" + std::to_string(ingid) +
|
||||||
std::string("_Step_0_Combined_Mesh.gv");
|
std::string("_Step_0_Combined_Mesh.gv");
|
||||||
std::string contourTreeMeshLabel = std::string("Block ") +
|
std::string contourTreeMeshLabel = std::string("Block ") +
|
||||||
std::to_string(static_cast<int>(block->BlockIndex)) + " Round " +
|
std::to_string(static_cast<int>(block->LocalBlockNo)) + " Round " +
|
||||||
std::to_string(rp.round()) + " Partner " + std::to_string(ingid) +
|
std::to_string(rp.round()) + " Partner " + std::to_string(ingid) +
|
||||||
std::string(" Step 0 Combined Mesh");
|
std::string(" Step 0 Combined Mesh");
|
||||||
std::string contourTreeMeshString =
|
std::string contourTreeMeshString =
|
||||||
|
@ -94,7 +94,7 @@ struct DistributedContourTreeBlockData
|
|||||||
vtkm::worklet::contourtree_distributed::HierarchicalContourTree<FieldType> AugmentedTree;
|
vtkm::worklet::contourtree_distributed::HierarchicalContourTree<FieldType> AugmentedTree;
|
||||||
|
|
||||||
// Destroy function allowing DIY to own blocks and clean them up after use
|
// Destroy function allowing DIY to own blocks and clean them up after use
|
||||||
static void destroy(void* b)
|
static void Destroy(void* b)
|
||||||
{
|
{
|
||||||
delete static_cast<DistributedContourTreeBlockData<FieldType>*>(b);
|
delete static_cast<DistributedContourTreeBlockData<FieldType>*>(b);
|
||||||
}
|
}
|
||||||
|
@ -75,6 +75,7 @@
|
|||||||
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
#include <vtkm/worklet/contourtree_augmented/meshtypes/ContourTreeMesh.h>
|
#include <vtkm/worklet/contourtree_augmented/meshtypes/ContourTreeMesh.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/FindRegularByGlobal.h>
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/FindRegularByGlobal.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/FindSuperArcBetweenNodes.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/FindSuperArcForUnknownNode.h>
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/FindSuperArcForUnknownNode.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/InitalizeSuperchildrenWorklet.h>
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/InitalizeSuperchildrenWorklet.h>
|
||||||
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/PermuteComparator.h>
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/PermuteComparator.h>
|
||||||
@ -188,6 +189,13 @@ public:
|
|||||||
this->DataValues);
|
this->DataValues);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/// routine to create a FindSuperArcBetweenNodes object that we can use as an input for worklets to call the function
|
||||||
|
VTKM_CONT
|
||||||
|
FindSuperArcBetweenNodes GetFindSuperArcBetweenNodes() const
|
||||||
|
{
|
||||||
|
return FindSuperArcBetweenNodes(this->Superarcs);
|
||||||
|
}
|
||||||
|
|
||||||
/// routine to initialize the hierarchical tree with the top level tree
|
/// routine to initialize the hierarchical tree with the top level tree
|
||||||
VTKM_CONT
|
VTKM_CONT
|
||||||
void Initialize(vtkm::Id numRounds,
|
void Initialize(vtkm::Id numRounds,
|
||||||
|
@ -0,0 +1,658 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=======================================================================================
|
||||||
|
//
|
||||||
|
// Parallel Peak Pruning v. 2.0
|
||||||
|
//
|
||||||
|
// Started June 15, 2017
|
||||||
|
//
|
||||||
|
// Copyright Hamish Carr, University of Leeds
|
||||||
|
//
|
||||||
|
// HierarchicalVolumetricBranchDecomposer.h
|
||||||
|
//
|
||||||
|
//=======================================================================================
|
||||||
|
//
|
||||||
|
// COMMENTS:
|
||||||
|
//
|
||||||
|
// This class computes the branch decomposition by volume for a given hierarchical
|
||||||
|
// contour tree.
|
||||||
|
//
|
||||||
|
// It takes as input arrays of dependent and intrinsic volumes for each superarc
|
||||||
|
// (it needs both, in order to compute the dependent volume at each end of each superarc)
|
||||||
|
//
|
||||||
|
// Recall from the non-hierarchical version that in order to compute the branch decomposition,
|
||||||
|
// we need to choose the "best up" and "best down" superarc for each supernode - i.e. the
|
||||||
|
// superarc with the largest dependent volume. Since we only wish to compare superarcs that
|
||||||
|
// meet at a given supernode, we tiebreak by always taking the superarc whose "other" end
|
||||||
|
// has a higher ID.
|
||||||
|
//
|
||||||
|
// Once the best up & best down have been found for each supernode, branches are identified
|
||||||
|
// with (essentially) a graph connectivity computation.
|
||||||
|
//
|
||||||
|
// Conceptually, each superarc is a vertex in a new (temporary) graph. For each supernode, the
|
||||||
|
// "best up" superarc is connected to the "best down" superarc. This defines a graph in which
|
||||||
|
// each branch is a connected component. A single path-doubling pass then collects the branches
|
||||||
|
//
|
||||||
|
// In the non-hierarchical version, this was done with supernode IDs (I can't remember why),
|
||||||
|
// with the upper end of each branch being treated as the root node.
|
||||||
|
//
|
||||||
|
// To construct the hierarchical branch decomposition, we assume that the hierarchical contour
|
||||||
|
// tree has already been augmented with all attachment points. If not, the code may produce
|
||||||
|
// undefined results.
|
||||||
|
//
|
||||||
|
// In the first step, we will run a local routine for each rank to determine the best up / down
|
||||||
|
// as far as the rank knows. We will then do a fan-in swap to determine the best up / down for
|
||||||
|
// shared vertices. At the end of this step, all ranks will share the knowledge of the best
|
||||||
|
// up / down superarc, stored as:
|
||||||
|
// i. the superarc ID, which may be reused on other ranks
|
||||||
|
// ii. the global ID of the outer end of that superarc, which is unique across all ranks
|
||||||
|
// iii. the volume dependent on that superarc
|
||||||
|
//
|
||||||
|
// In the second stage, each rank will do a local computation of the branches. However, most ranks
|
||||||
|
// will not have the full set of supernodes / superarcs for each branch, even (or especially)
|
||||||
|
// for the master branch. It is therefore a bad idea to collapse to the upper end of the branch
|
||||||
|
// as we did in the non-hierarchical version.
|
||||||
|
//
|
||||||
|
// Instead, we will define the root of each component to be the most senior superarc ID. This will
|
||||||
|
// be canonical, because of the way we construct the hierarchical tree, with low superarc IDs
|
||||||
|
// occurring at higher levels of the tree, so all shared superarcs are a prefix set. Therefore,
|
||||||
|
// the most senior superarc ID will always indicate the highest level of the tree through which the
|
||||||
|
// branch passes, and is safe. Moreover, it is not necessary for each rank to determine the full
|
||||||
|
// branch, merely the part of the branch that passes through the superarcs it tracks. It may even
|
||||||
|
// happen that no single rank stores the entire branch, as for example if the global minimum
|
||||||
|
// and maximum are interior to different ranks.
|
||||||
|
//
|
||||||
|
// Note that most senior means testing iteration, round, then ID
|
||||||
|
//
|
||||||
|
// RESIZE SEMANTICS: Oliver Ruebel has asked for the semantics of all resize() calls to be annotated
|
||||||
|
// in order to ease porting to vtkm. These will be flagged with a RESIZE SEMANTICS: comment, and will
|
||||||
|
// generally fall into several patterns:
|
||||||
|
// 1. FIXED: Resize() is used to initialize the array size for an array that will never change size
|
||||||
|
// 2. COMPRESS: Resize() is used after a compression operation (eg remove_if()) so that the
|
||||||
|
// array size() call does not include the elements removed. This is a standard
|
||||||
|
// C++ pattern, but could be avoided by storing an explicit element count (curiously,
|
||||||
|
// the std::vector class does exactly this with logical vs. physical array sizes).
|
||||||
|
// 3. MULTI-COMPRESS: Resize() may also be used (as in the early stages of the PPP algorithm) to give
|
||||||
|
// a collapsing array size of working elements. Again, this could on principle by
|
||||||
|
// avoided with an array count, but is likely to be intricate.
|
||||||
|
//
|
||||||
|
//=======================================================================================
|
||||||
|
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_h
|
||||||
|
|
||||||
|
#include <iomanip>
|
||||||
|
#include <string>
|
||||||
|
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/NotNoSuchElementPredicate.h>
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/PrintVectors.h>
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/PrintGraph.h>
|
||||||
|
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/HierarchicalContourTree.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/CollapseBranchesPointerDoublingWorklet.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/CollapseBranchesWorklet.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeBestUpDownEdgeWorklet.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeInitSuperarcListWorklet.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeWorklet.h>
|
||||||
|
#include <vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/SuperArcVolumetricComparatorIndirectGlobalIdComparator.h>
|
||||||
|
|
||||||
|
#ifdef DEBUG_PRINT
|
||||||
|
#define DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
#endif
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
|
||||||
|
/// Facture class for augmenting the hierarchical contour tree to enable computations of measures, e.g., volumne
|
||||||
|
template <typename FieldType>
|
||||||
|
class HierarchicalVolumetricBranchDecomposer
|
||||||
|
{ // class HierarchicalVolumetricBranchDecomposer
|
||||||
|
public:
|
||||||
|
/// we will want arrays for swapping with our partners, holding the best up/down superarc & the corresponding volume
|
||||||
|
/// the best up/down will be in local supernode IDs initially, but during the swap will need to be global node IDs
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType BestUpSupernode;
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType BestDownSupernode;
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType BestUpVolume;
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType BestDownVolume;
|
||||||
|
|
||||||
|
/// working arrays - kept at class level to simplify debug print
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType UpVolume;
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType DownVolume;
|
||||||
|
|
||||||
|
/// Because we want to use array allocation in main, we need a default constructor
|
||||||
|
/// Unfortunately, that means we have problems with references, and the workaround is to have
|
||||||
|
/// the references passed to the individual functions
|
||||||
|
HierarchicalVolumetricBranchDecomposer<FieldType>(){};
|
||||||
|
|
||||||
|
/// routines to compute branch decomposition by volume
|
||||||
|
/// WARNING: we now have two types of hierarchical tree sharing a data structure:
|
||||||
|
/// I. hierarchical tree without augmentation
|
||||||
|
/// II. hierarchical tree with augmentation
|
||||||
|
/// We only expect to call this for II, but it's wiser to make sure that it computes for I as well.
|
||||||
|
/// Also, this code is substantially identical to ContourTreeMaker::ComputeVolumeBranchDecomposition()
|
||||||
|
/// except for:
|
||||||
|
/// A. it has to deal with the round/iteration paradigm of hierarchical trees, and
|
||||||
|
/// B. Stages III-IV in particular are modified
|
||||||
|
/// C. Several stages involve fan-ins
|
||||||
|
/// The principal reason for the modifications in B. is that the old code collapses branches to their maximum
|
||||||
|
/// which is often a leaf. In the hierarchical version, the leaf will often not be represented on all ranks, so
|
||||||
|
/// we modify it to collapse towards the "most senior". This will be easiest if we collapse by superarc IDs instead of supernode IDs
|
||||||
|
/// For C., we have to break the code into separate routines so that the fan-in MPI can be outside this unit.
|
||||||
|
///
|
||||||
|
/// WARNING! WARNING! WARNING!
|
||||||
|
/// In the non-hierarchical version, the last (virtual root) superarc goes from the highest ID supernode to NO_SUCH_ELEMENT
|
||||||
|
/// If it was included in the sorts, this could cause problems
|
||||||
|
/// The (simple) way out of this was to set nSuperarcs = nSupernodes - 1 when copying our temporary list of superarcs
|
||||||
|
/// that way we don't use it at all.
|
||||||
|
/// In the hierarchical version, this no longer works, because attachment points may also have virtual superarcs
|
||||||
|
/// So we either need to compress them out (an extra log step) or ignore them in the later loop.
|
||||||
|
/// Of the two, compressing them out is safer
|
||||||
|
///
|
||||||
|
/// routine that determines the best upwards/downwards edges at each vertex
|
||||||
|
/// Unlike the local version, the best might only be stored on another rank
|
||||||
|
/// so we will compute the locally best up or down, then swap until all ranks choose the same best
|
||||||
|
|
||||||
|
void LocalBestUpDownByVolume(
|
||||||
|
const vtkm::worklet::contourtree_distributed::HierarchicalContourTree<FieldType>*
|
||||||
|
hierarchicalTree,
|
||||||
|
const vtkm::cont::ArrayHandle<vtkm::Id>& intrinsicValues,
|
||||||
|
const vtkm::cont::ArrayHandle<vtkm::Id>& dependentValues,
|
||||||
|
vtkm::Id totalVolume);
|
||||||
|
|
||||||
|
/// routine to compute the local set of superarcs that root at a given one
|
||||||
|
void CollapseBranches(const vtkm::worklet::contourtree_distributed::HierarchicalContourTree<
|
||||||
|
FieldType>* hierarchicalTree,
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType& branchRoot);
|
||||||
|
|
||||||
|
// routine to print branches
|
||||||
|
std::string PrintBranches(const vtkm::worklet::contourtree_distributed::HierarchicalContourTree<
|
||||||
|
FieldType>* hierarchicalTree,
|
||||||
|
const vtkm::worklet::contourtree_augmented::IdArrayType& branchRoot);
|
||||||
|
static std::string PrintBranches(const vtkm::cont::DataSet& ds);
|
||||||
|
|
||||||
|
/// debug routine
|
||||||
|
std::string DebugPrint(std::string message, const char* fileName, long lineNum);
|
||||||
|
|
||||||
|
private:
|
||||||
|
/// Used internally to Invoke worklets
|
||||||
|
vtkm::cont::Invoker Invoke;
|
||||||
|
|
||||||
|
}; // class HierarchicalVolumetricBranchDecomposer
|
||||||
|
|
||||||
|
|
||||||
|
template <typename FieldType>
|
||||||
|
void HierarchicalVolumetricBranchDecomposer<FieldType>::LocalBestUpDownByVolume(
|
||||||
|
const vtkm::worklet::contourtree_distributed::HierarchicalContourTree<FieldType>*
|
||||||
|
hierarchicalTree,
|
||||||
|
const vtkm::cont::ArrayHandle<vtkm::Id>& intrinsicValues,
|
||||||
|
const vtkm::cont::ArrayHandle<vtkm::Id>& dependentValues,
|
||||||
|
vtkm::Id totalVolume)
|
||||||
|
{
|
||||||
|
// LocalBestUpDownByVolume
|
||||||
|
// STAGE I: Allocate memory for our arrays
|
||||||
|
vtkm::Id nSupernodes = hierarchicalTree->Supernodes.GetNumberOfValues();
|
||||||
|
// WARNING: This differs from the non-hierarchical version by using the full size *WITH* virtual superarcs
|
||||||
|
vtkm::Id nSuperarcs = hierarchicalTree->Superarcs.GetNumberOfValues();
|
||||||
|
|
||||||
|
// set up a list of superarcs as Edges for reference in our comparator
|
||||||
|
vtkm::worklet::contourtree_augmented::EdgePairArray superarcList;
|
||||||
|
superarcList.Allocate(nSuperarcs);
|
||||||
|
VTKM_ASSERT(hierarchicalTree->Superarcs.GetNumberOfValues() == superarcList.GetNumberOfValues());
|
||||||
|
this->Invoke(vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
LocalBestUpDownByVolumeInitSuperarcListWorklet{}, // the worklet
|
||||||
|
hierarchicalTree->Superarcs, // input
|
||||||
|
superarcList // output
|
||||||
|
);
|
||||||
|
|
||||||
|
|
||||||
|
#ifdef DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
{
|
||||||
|
std::stringstream resultStream;
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(superarcList.GetNumberOfValues(),
|
||||||
|
resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintEdgePairArray(
|
||||||
|
"Superarc List", superarcList, -1, resultStream);
|
||||||
|
resultStream << std::endl;
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, resultStream.str());
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
|
||||||
|
// create a list of the non-virtual superarcs
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType actualSuperarcs;
|
||||||
|
// and fill it up with index values [0, 1, 2 ... nSuperarcs-1] while simultaneously stream compacting the
|
||||||
|
// values by keeping only those indices where the hierarchicalTree->Superarcs is not NoSuchElement.
|
||||||
|
vtkm::cont::Algorithm::CopyIf(vtkm::cont::ArrayHandleIndex(nSuperarcs), //input
|
||||||
|
hierarchicalTree->Superarcs, // stencil
|
||||||
|
actualSuperarcs, // output target array
|
||||||
|
vtkm::worklet::contourtree_augmented::NotNoSuchElementPredicate{});
|
||||||
|
// NOTE: The behavior here is slightly different from the original implementation, as the original code
|
||||||
|
// here does not resize actualSuperarcs but keeps it at the full length of nSuperacs and instead
|
||||||
|
// relies on the nActualSuperarcs parameter. However, the extra values are never used, so compacting
|
||||||
|
// the array here should be fine.
|
||||||
|
vtkm::Id nActualSuperarcs = actualSuperarcs.GetNumberOfValues();
|
||||||
|
|
||||||
|
#ifdef DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
{
|
||||||
|
std::stringstream resultStream;
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(nActualSuperarcs, resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Actual Superarcs", actualSuperarcs, -1, resultStream);
|
||||||
|
resultStream << std::endl;
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, resultStream.str());
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
|
||||||
|
// and set up arrays for the best upwards, downwards superarcs at each supernode
|
||||||
|
// initialize everything to NO_SUCH_ELEMENT for safety (we will test against this, so it's necessary)
|
||||||
|
// Set up temporary constant arrays for each group of arrays and initalize the arrays
|
||||||
|
// Initalize the arrays
|
||||||
|
using vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
|
||||||
|
this->UpVolume.AllocateAndFill(nSuperarcs, 0);
|
||||||
|
this->DownVolume.AllocateAndFill(nSuperarcs, 0);
|
||||||
|
this->BestUpSupernode.AllocateAndFill(nSupernodes, NO_SUCH_ELEMENT);
|
||||||
|
this->BestDownSupernode.AllocateAndFill(nSupernodes, NO_SUCH_ELEMENT);
|
||||||
|
this->BestUpVolume.AllocateAndFill(nSupernodes, 0);
|
||||||
|
this->BestDownVolume.AllocateAndFill(nSupernodes, 0);
|
||||||
|
|
||||||
|
#ifdef DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, DebugPrint("Arrays Allocated", __FILE__, __LINE__));
|
||||||
|
#endif
|
||||||
|
|
||||||
|
// STAGE II: Pick the best (largest volume) edge upwards and downwards
|
||||||
|
// II A. Compute the up / down volumes for indirect sorting
|
||||||
|
// this is the same in spirit as ContourTreeMaker::ComputeVolumeBranchDecomposition() STAGE II A.
|
||||||
|
// given that we have already suppressed the non-virtual superarcs
|
||||||
|
// however, in this case, we need to use the actualSuperarcs array instead of the main array
|
||||||
|
{
|
||||||
|
vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
LocalBestUpDownByVolumeBestUpDownEdgeWorklet bestUpDownEdgeWorklet(totalVolume);
|
||||||
|
// permut input and output arrays here so we can use FieldIn and FieldOut to
|
||||||
|
// avoid the use of WholeArray access in the worklet
|
||||||
|
auto permutedHierarchicalTreeSuperarcs = vtkm::cont::make_ArrayHandlePermutation(
|
||||||
|
actualSuperarcs, hierarchicalTree->Superarcs); // input
|
||||||
|
auto permutedDependetValues =
|
||||||
|
vtkm::cont::make_ArrayHandlePermutation(actualSuperarcs, dependentValues); // input
|
||||||
|
auto permutedIntrinsicValues =
|
||||||
|
vtkm::cont::make_ArrayHandlePermutation(actualSuperarcs, intrinsicValues); // input
|
||||||
|
auto permutedUpVolume =
|
||||||
|
vtkm::cont::make_ArrayHandlePermutation(actualSuperarcs, this->UpVolume); // output
|
||||||
|
auto permitedDownVolume =
|
||||||
|
vtkm::cont::make_ArrayHandlePermutation(actualSuperarcs, this->DownVolume); // outout
|
||||||
|
|
||||||
|
this->Invoke(bestUpDownEdgeWorklet, // the worklet
|
||||||
|
permutedHierarchicalTreeSuperarcs, // input
|
||||||
|
permutedDependetValues, // input
|
||||||
|
permutedIntrinsicValues, // input
|
||||||
|
permutedUpVolume, // output
|
||||||
|
permitedDownVolume // outout
|
||||||
|
);
|
||||||
|
}
|
||||||
|
|
||||||
|
#ifdef DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, DebugPrint("Volume Arrays Set Up", __FILE__, __LINE__));
|
||||||
|
{
|
||||||
|
std::stringstream resultStream;
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(superarcList.GetNumberOfValues(),
|
||||||
|
resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintEdgePairArray(
|
||||||
|
"Superarc List", superarcList, -1, resultStream);
|
||||||
|
resultStream << std::endl;
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, resultStream.str());
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
// II B. Pick the best downwards volume by sorting on upper vertex then processing by segments (segmented by vertex)
|
||||||
|
// II B 1. Sort the superarcs by upper vertex
|
||||||
|
// NB: We reuse the actual superarcs list here - this works because we have indexed the volumes on the underlying superarc ID
|
||||||
|
// NB 2: Notice that we only sort the "actual" ones - this is to avoid unnecessary resize() calls in vtkm later on
|
||||||
|
{
|
||||||
|
vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparator
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparator(
|
||||||
|
this->UpVolume, superarcList, hierarchicalTree->RegularNodeGlobalIds, false);
|
||||||
|
vtkm::cont::Algorithm::Sort(actualSuperarcs,
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparator);
|
||||||
|
}
|
||||||
|
|
||||||
|
#ifdef DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
{
|
||||||
|
std::stringstream resultStream;
|
||||||
|
resultStream
|
||||||
|
<< "Actual Superarc List After Sorting By High End (Full Array, including ignored elements)"
|
||||||
|
<< std::endl;
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(nActualSuperarcs, resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Actual Superarcs", actualSuperarcs, -1, resultStream);
|
||||||
|
resultStream << std::endl;
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, resultStream.str());
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
// II B 2. Per vertex, best superarc writes to the best downward array
|
||||||
|
{
|
||||||
|
auto permutedUpVolume =
|
||||||
|
vtkm::cont::make_ArrayHandlePermutation(actualSuperarcs, this->UpVolume);
|
||||||
|
this->Invoke(vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
LocalBestUpDownByVolumeWorklet<true>{ nActualSuperarcs },
|
||||||
|
actualSuperarcs, // input
|
||||||
|
superarcList, // input
|
||||||
|
permutedUpVolume, // input
|
||||||
|
hierarchicalTree->RegularNodeGlobalIds, // input
|
||||||
|
hierarchicalTree->Supernodes, // input
|
||||||
|
this->BestDownSupernode, // output
|
||||||
|
this->BestDownVolume // output
|
||||||
|
);
|
||||||
|
}
|
||||||
|
#ifdef DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info,
|
||||||
|
DebugPrint("BestDownSupernode Written", __FILE__, __LINE__));
|
||||||
|
#endif
|
||||||
|
|
||||||
|
// II B 3. Repeat for lower vertex
|
||||||
|
{
|
||||||
|
vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparator
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparator(
|
||||||
|
this->DownVolume, superarcList, hierarchicalTree->RegularNodeGlobalIds, true);
|
||||||
|
vtkm::cont::Algorithm::Sort(actualSuperarcs,
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparator);
|
||||||
|
}
|
||||||
|
|
||||||
|
#ifdef DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
{
|
||||||
|
std::stringstream resultStream;
|
||||||
|
resultStream
|
||||||
|
<< "Actual Superarc List After Sorting By Low End (Full Array, including ignored elements)"
|
||||||
|
<< std::endl;
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(nActualSuperarcs, resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Actual Superarcs", actualSuperarcs, -1, resultStream);
|
||||||
|
resultStream << std::endl;
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, resultStream.str());
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
|
||||||
|
// II B 2. Per vertex, best superarc writes to the best upward array
|
||||||
|
{
|
||||||
|
auto permutedDownVolume =
|
||||||
|
vtkm::cont::make_ArrayHandlePermutation(actualSuperarcs, this->DownVolume);
|
||||||
|
this->Invoke(vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
LocalBestUpDownByVolumeWorklet<false>{ nActualSuperarcs },
|
||||||
|
actualSuperarcs, // input
|
||||||
|
superarcList, // input
|
||||||
|
permutedDownVolume, // input
|
||||||
|
hierarchicalTree->RegularNodeGlobalIds, // input
|
||||||
|
hierarchicalTree->Supernodes, // input
|
||||||
|
this->BestUpSupernode, // output
|
||||||
|
this->BestUpVolume // output
|
||||||
|
);
|
||||||
|
}
|
||||||
|
|
||||||
|
#ifdef DEBUG_HIERARCHICAL_VOLUMETRIC_BRANCH_DECOMPOSER
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info,
|
||||||
|
DebugPrint("Local Best Up/Down Computed", __FILE__, __LINE__));
|
||||||
|
#endif
|
||||||
|
} // LocalBestUpDownByVolume
|
||||||
|
|
||||||
|
template <typename FieldType>
|
||||||
|
void HierarchicalVolumetricBranchDecomposer<FieldType>::CollapseBranches(
|
||||||
|
const vtkm::worklet::contourtree_distributed::HierarchicalContourTree<FieldType>*
|
||||||
|
hierarchicalTree,
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType& branchRoot)
|
||||||
|
{ // CollapseBranches
|
||||||
|
// initialise the superarcs to be their own branch roots
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info,
|
||||||
|
"Initializing branch root with " << branchRoot.GetNumberOfValues() << " values.");
|
||||||
|
vtkm::cont::Algorithm::Copy(vtkm::cont::ArrayHandleIndex(branchRoot.GetNumberOfValues()),
|
||||||
|
branchRoot);
|
||||||
|
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "Convert to superarc ID.");
|
||||||
|
// For each supernode, convert the best up into a superarc ID
|
||||||
|
{
|
||||||
|
vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
CollapseBranchesWorklet collapseBranchesWorklet;
|
||||||
|
auto findRegularByGlobal = hierarchicalTree->GetFindRegularByGlobal();
|
||||||
|
auto findSuperArcBetweenNodes = hierarchicalTree->GetFindSuperArcBetweenNodes();
|
||||||
|
this->Invoke(collapseBranchesWorklet, // the worklet
|
||||||
|
this->BestUpSupernode, // input
|
||||||
|
this->BestDownSupernode, // input
|
||||||
|
findRegularByGlobal, // input ExecutionObject
|
||||||
|
findSuperArcBetweenNodes, // input ExecutionObject
|
||||||
|
hierarchicalTree->Regular2Supernode, // input
|
||||||
|
hierarchicalTree->WhichRound, // input
|
||||||
|
branchRoot);
|
||||||
|
}
|
||||||
|
|
||||||
|
VTKM_LOG_S(vtkm::cont::LogLevel::Info, "Pointer doubling.");
|
||||||
|
// OK. We've now initialized it, and can use pointer-doubling
|
||||||
|
// Compute the number of log steps required
|
||||||
|
vtkm::Id nLogSteps = 1;
|
||||||
|
for (vtkm::Id shifter = branchRoot.GetNumberOfValues(); shifter != 0; shifter >>= 1)
|
||||||
|
{
|
||||||
|
nLogSteps++;
|
||||||
|
}
|
||||||
|
|
||||||
|
// loop that many times, pointer-doubling
|
||||||
|
for (vtkm::Id iteration = 0; iteration < nLogSteps; iteration++)
|
||||||
|
{ // per iteration
|
||||||
|
// loop through the vertices, updating
|
||||||
|
vtkm::worklet::contourtree_distributed::hierarchical_volumetric_branch_decomposer::
|
||||||
|
CollapseBranchesPointerDoublingWorklet collapseBranchesPointerDoublingWorklet;
|
||||||
|
this->Invoke(collapseBranchesPointerDoublingWorklet, branchRoot);
|
||||||
|
} // per iteration
|
||||||
|
|
||||||
|
} // CollapseBranches
|
||||||
|
|
||||||
|
|
||||||
|
// routine to print branches
|
||||||
|
template <typename FieldType>
|
||||||
|
std::string HierarchicalVolumetricBranchDecomposer<FieldType>::PrintBranches(
|
||||||
|
const vtkm::worklet::contourtree_distributed::HierarchicalContourTree<FieldType>*
|
||||||
|
hierarchicalTree,
|
||||||
|
const vtkm::worklet::contourtree_augmented::IdArrayType& branchRoot)
|
||||||
|
{ // PrintBranches
|
||||||
|
// we want to dump out the branches as viewed by this rank.
|
||||||
|
// most of the processing will be external, so we keep this simple.
|
||||||
|
// For each end of the superarc, we print out value & global ID prefixed by global ID of the branch root
|
||||||
|
// The external processing will then sort them to construct segments (as usual) in the array
|
||||||
|
// then a post-process can find the first and last in each segment & print out the branch
|
||||||
|
// In order for the sort to work lexicographically, we need to print out in the following order:
|
||||||
|
// I Branch Root Global ID
|
||||||
|
// II Supernode Value
|
||||||
|
// III Supernode Global ID
|
||||||
|
std::stringstream resultStream;
|
||||||
|
// loop through the individual superarcs
|
||||||
|
auto hierarchicalTreeSuperarcsPortal = hierarchicalTree->Superarcs.ReadPortal();
|
||||||
|
auto hierarchicalTreeSupernodesPortal = hierarchicalTree->Supernodes.ReadPortal();
|
||||||
|
auto hierarchicalTreeRegularNodeGlobalIdsPortal =
|
||||||
|
hierarchicalTree->RegularNodeGlobalIds.ReadPortal();
|
||||||
|
auto hierarchicalTreeDataValuesPortal = hierarchicalTree->DataValues.ReadPortal();
|
||||||
|
auto branchRootPortal = branchRoot.ReadPortal();
|
||||||
|
|
||||||
|
for (vtkm::Id superarc = 0; superarc < hierarchicalTree->Superarcs.GetNumberOfValues();
|
||||||
|
superarc++)
|
||||||
|
{ // per superarc
|
||||||
|
// explicit test for root superarc / attachment points
|
||||||
|
if (vtkm::worklet::contourtree_augmented::NoSuchElement(
|
||||||
|
hierarchicalTreeSuperarcsPortal.Get(superarc)))
|
||||||
|
{
|
||||||
|
continue;
|
||||||
|
}
|
||||||
|
|
||||||
|
// now retrieve the branch root's global ID
|
||||||
|
vtkm::Id branchRootSuperId = branchRootPortal.Get(superarc);
|
||||||
|
vtkm::Id branchRootRegularId = hierarchicalTreeSupernodesPortal.Get(branchRootSuperId);
|
||||||
|
vtkm::Id branchRootGlobalId =
|
||||||
|
hierarchicalTreeRegularNodeGlobalIdsPortal.Get(branchRootRegularId);
|
||||||
|
|
||||||
|
// now retrieve the global ID & value for each end & output them
|
||||||
|
vtkm::Id superFromRegularId = hierarchicalTreeSupernodesPortal.Get(superarc);
|
||||||
|
vtkm::Id superFromGlobalId = hierarchicalTreeRegularNodeGlobalIdsPortal.Get(superFromRegularId);
|
||||||
|
FieldType superFromValue = hierarchicalTreeDataValuesPortal.Get(superFromRegularId);
|
||||||
|
resultStream << branchRootGlobalId << "\t" << superFromValue << "\t" << superFromGlobalId
|
||||||
|
<< std::endl;
|
||||||
|
|
||||||
|
// now retrieve the global ID & value for each end & output them
|
||||||
|
vtkm::Id superToRegularId = vtkm::worklet::contourtree_augmented::MaskedIndex(
|
||||||
|
hierarchicalTreeSuperarcsPortal.Get(superarc));
|
||||||
|
vtkm::Id superToGlobalId = hierarchicalTreeRegularNodeGlobalIdsPortal.Get(superToRegularId);
|
||||||
|
FieldType superToValue = hierarchicalTreeDataValuesPortal.Get(superToRegularId);
|
||||||
|
resultStream << branchRootGlobalId << "\t" << superToValue << "\t" << superToGlobalId
|
||||||
|
<< std::endl;
|
||||||
|
} // per superarc
|
||||||
|
return resultStream.str();
|
||||||
|
} // PrintBranches
|
||||||
|
|
||||||
|
// routine to print branches
|
||||||
|
template <typename FieldType>
|
||||||
|
std::string HierarchicalVolumetricBranchDecomposer<FieldType>::PrintBranches(
|
||||||
|
const vtkm::cont::DataSet& ds)
|
||||||
|
{ // PrintBranches
|
||||||
|
// we want to dump out the branches as viewed by this rank.
|
||||||
|
// most of the processing will be external, so we keep this simple.
|
||||||
|
// For each end of the superarc, we print out value & global ID prefixed by global ID of the branch root
|
||||||
|
// The external processing will then sort them to construct segments (as usual) in the array
|
||||||
|
// then a post-process can find the first and last in each segment & print out the branch
|
||||||
|
// In order for the sort to work lexicographically, we need to print out in the following order:
|
||||||
|
// I Branch Root Global ID
|
||||||
|
// II Supernode Value
|
||||||
|
// III Supernode Global ID
|
||||||
|
std::stringstream resultStream;
|
||||||
|
// loop through the individual superarcs
|
||||||
|
|
||||||
|
|
||||||
|
auto hierarchicalTreeSuperarcsAH =
|
||||||
|
ds.GetField("Superarcs").GetData().AsArrayHandle<vtkm::cont::ArrayHandle<vtkm::Id>>();
|
||||||
|
auto hierarchicalTreeSuperarcsPortal = hierarchicalTreeSuperarcsAH.ReadPortal();
|
||||||
|
vtkm::Id nSuperarcs = hierarchicalTreeSuperarcsAH.GetNumberOfValues();
|
||||||
|
auto hierarchicalTreeSupernodesPortal = ds.GetField("Supernodes")
|
||||||
|
.GetData()
|
||||||
|
.AsArrayHandle<vtkm::cont::ArrayHandle<vtkm::Id>>()
|
||||||
|
.ReadPortal();
|
||||||
|
auto hierarchicalTreeRegularNodeGlobalIdsPortal =
|
||||||
|
ds.GetField("RegularNodeGlobalIds")
|
||||||
|
.GetData()
|
||||||
|
.AsArrayHandle<vtkm::cont::ArrayHandle<vtkm::Id>>()
|
||||||
|
.ReadPortal();
|
||||||
|
auto hierarchicalTreeDataValuesPortal = ds.GetField("DataValues")
|
||||||
|
.GetData()
|
||||||
|
.AsArrayHandle<vtkm::cont::ArrayHandle<FieldType>>()
|
||||||
|
.ReadPortal();
|
||||||
|
auto branchRootPortal = ds.GetField("BranchRoots")
|
||||||
|
.GetData()
|
||||||
|
.AsArrayHandle<vtkm::cont::ArrayHandle<vtkm::Id>>()
|
||||||
|
.ReadPortal();
|
||||||
|
|
||||||
|
for (vtkm::Id superarc = 0; superarc < nSuperarcs; superarc++)
|
||||||
|
{ // per superarc
|
||||||
|
// explicit test for root superarc / attachment points
|
||||||
|
if (vtkm::worklet::contourtree_augmented::NoSuchElement(
|
||||||
|
hierarchicalTreeSuperarcsPortal.Get(superarc)))
|
||||||
|
{
|
||||||
|
continue;
|
||||||
|
}
|
||||||
|
|
||||||
|
// now retrieve the branch root's global ID
|
||||||
|
vtkm::Id branchRootSuperId = branchRootPortal.Get(superarc);
|
||||||
|
vtkm::Id branchRootRegularId = hierarchicalTreeSupernodesPortal.Get(branchRootSuperId);
|
||||||
|
vtkm::Id branchRootGlobalId =
|
||||||
|
hierarchicalTreeRegularNodeGlobalIdsPortal.Get(branchRootRegularId);
|
||||||
|
|
||||||
|
// now retrieve the global ID & value for each end & output them
|
||||||
|
vtkm::Id superFromRegularId = hierarchicalTreeSupernodesPortal.Get(superarc);
|
||||||
|
vtkm::Id superFromGlobalId = hierarchicalTreeRegularNodeGlobalIdsPortal.Get(superFromRegularId);
|
||||||
|
FieldType superFromValue = hierarchicalTreeDataValuesPortal.Get(superFromRegularId);
|
||||||
|
resultStream << branchRootGlobalId << "\t" << superFromValue << "\t" << superFromGlobalId
|
||||||
|
<< std::endl;
|
||||||
|
|
||||||
|
// now retrieve the global ID & value for each end & output them
|
||||||
|
vtkm::Id superToRegularId = vtkm::worklet::contourtree_augmented::MaskedIndex(
|
||||||
|
hierarchicalTreeSuperarcsPortal.Get(superarc));
|
||||||
|
vtkm::Id superToGlobalId = hierarchicalTreeRegularNodeGlobalIdsPortal.Get(superToRegularId);
|
||||||
|
FieldType superToValue = hierarchicalTreeDataValuesPortal.Get(superToRegularId);
|
||||||
|
resultStream << branchRootGlobalId << "\t" << superToValue << "\t" << superToGlobalId
|
||||||
|
<< std::endl;
|
||||||
|
} // per superarc
|
||||||
|
return resultStream.str();
|
||||||
|
} // PrintBranches
|
||||||
|
|
||||||
|
// debug routine
|
||||||
|
template <typename FieldType>
|
||||||
|
std::string HierarchicalVolumetricBranchDecomposer<FieldType>::DebugPrint(std::string message,
|
||||||
|
const char* fileName,
|
||||||
|
long lineNum)
|
||||||
|
{ // DebugPrint()
|
||||||
|
std::stringstream resultStream;
|
||||||
|
resultStream << "----------------------------------------" << std::endl;
|
||||||
|
resultStream << std::setw(30) << std::left << fileName << ":" << std::right << std::setw(4)
|
||||||
|
<< lineNum << std::endl;
|
||||||
|
resultStream << std::left << message << std::endl;
|
||||||
|
resultStream << "Hypersweep Value Array Contains: " << std::endl;
|
||||||
|
resultStream << "----------------------------------------" << std::endl;
|
||||||
|
resultStream << std::endl;
|
||||||
|
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintHeader(this->UpVolume.GetNumberOfValues(),
|
||||||
|
resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Up Volume by SA", this->UpVolume, -1, resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Down Volume by SA", this->DownVolume, -1, resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Best Down Snode by SN", this->BestDownSupernode, -1, resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Best Down Volume by SN", this->BestDownVolume, -1, resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Best Up Snode by SN", this->BestUpSupernode, -1, resultStream);
|
||||||
|
vtkm::worklet::contourtree_augmented::PrintIndices(
|
||||||
|
"Best Up Volume by SN", this->BestUpVolume, -1, resultStream);
|
||||||
|
std::cout << std::endl;
|
||||||
|
return resultStream.str();
|
||||||
|
} // DebugPrint()
|
||||||
|
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
|
||||||
|
#endif
|
@ -68,7 +68,7 @@ template <typename ContourTreeDataFieldType>
|
|||||||
struct HyperSweepBlock
|
struct HyperSweepBlock
|
||||||
{
|
{
|
||||||
HyperSweepBlock(
|
HyperSweepBlock(
|
||||||
const vtkm::Id& localBlockNo,
|
const vtkm::Id localBlockNo,
|
||||||
const int globalBlockId,
|
const int globalBlockId,
|
||||||
const vtkm::Id3& origin,
|
const vtkm::Id3& origin,
|
||||||
const vtkm::Id3& size,
|
const vtkm::Id3& size,
|
||||||
@ -100,7 +100,7 @@ struct HyperSweepBlock
|
|||||||
vtkm::cont::ArrayHandle<vtkm::Id> DependentVolume;
|
vtkm::cont::ArrayHandle<vtkm::Id> DependentVolume;
|
||||||
|
|
||||||
// Destroy function allowing DIY to own blocks and clean them up after use
|
// Destroy function allowing DIY to own blocks and clean them up after use
|
||||||
static void destroy(void* b)
|
static void Destroy(void* b)
|
||||||
{
|
{
|
||||||
delete static_cast<HyperSweepBlock<ContourTreeDataFieldType>*>(b);
|
delete static_cast<HyperSweepBlock<ContourTreeDataFieldType>*>(b);
|
||||||
}
|
}
|
||||||
|
@ -11,6 +11,7 @@
|
|||||||
set(headers
|
set(headers
|
||||||
FindRegularByGlobal.h
|
FindRegularByGlobal.h
|
||||||
FindSuperArcForUnknownNode.h
|
FindSuperArcForUnknownNode.h
|
||||||
|
FindSuperArcBetweenNodes.h
|
||||||
PermuteComparator.h
|
PermuteComparator.h
|
||||||
InitalizeSuperchildrenWorklet.h
|
InitalizeSuperchildrenWorklet.h
|
||||||
)
|
)
|
||||||
|
142
vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/FindSuperArcBetweenNodes.h
Normal file
142
vtkm/worklet/contourtree_distributed/hierarchical_contour_tree/FindSuperArcBetweenNodes.h
Normal file
@ -0,0 +1,142 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
//
|
||||||
|
// This code is an extension of the algorithm presented in the paper:
|
||||||
|
// Parallel Peak Pruning for Scalable SMP Contour Tree Computation.
|
||||||
|
// Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
|
||||||
|
// Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
|
||||||
|
// (LDAV), October 2016, Baltimore, Maryland.
|
||||||
|
//
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_find_superarc_between_nodes_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_find_superarc_between_nodes_h
|
||||||
|
|
||||||
|
#include <vtkm/Types.h>
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
|
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
|
||||||
|
|
||||||
|
/// Device implementation of FindSuperArcBetweenNodes for the HierarchicalContourTree
|
||||||
|
/// Used in the hierarchical branch decomposition
|
||||||
|
class FindSuperArcBetweenNodesDeviceData
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
using IndicesPortalType =
|
||||||
|
typename vtkm::worklet::contourtree_augmented::IdArrayType::ReadPortalType;
|
||||||
|
|
||||||
|
VTKM_CONT
|
||||||
|
FindSuperArcBetweenNodesDeviceData(
|
||||||
|
vtkm::cont::DeviceAdapterId device,
|
||||||
|
vtkm::cont::Token& token,
|
||||||
|
const vtkm::worklet::contourtree_augmented::IdArrayType& superarcs)
|
||||||
|
{
|
||||||
|
// Prepare the arrays for input and store the array portals
|
||||||
|
// so that they can be used inside a workelt
|
||||||
|
this->SuperarcsPortal = superarcs.PrepareForInput(device, token);
|
||||||
|
}
|
||||||
|
|
||||||
|
// routine to find the superarc from one node to another
|
||||||
|
// it will always be the same ID as one of them if it exists
|
||||||
|
// if not, it will be NO_SUCH_ELEMENT
|
||||||
|
VTKM_EXEC
|
||||||
|
vtkm::Id FindSuperArcBetweenNodes(vtkm::Id firstSupernode, vtkm::Id secondSupernode) const
|
||||||
|
{ // FindSuperArcBetweenNodes()
|
||||||
|
// if the second is the target of the first's superarc
|
||||||
|
if (vtkm::worklet::contourtree_augmented::MaskedIndex(
|
||||||
|
this->SuperarcsPortal.Get(firstSupernode)) == secondSupernode)
|
||||||
|
{
|
||||||
|
return firstSupernode;
|
||||||
|
}
|
||||||
|
// flip and test the other way
|
||||||
|
if (vtkm::worklet::contourtree_augmented::MaskedIndex(
|
||||||
|
this->SuperarcsPortal.Get(secondSupernode)) == firstSupernode)
|
||||||
|
{
|
||||||
|
return secondSupernode;
|
||||||
|
}
|
||||||
|
// otherwise it fails
|
||||||
|
return vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
|
||||||
|
} // FindSuperArcBetweenNodes()
|
||||||
|
|
||||||
|
private:
|
||||||
|
// Array portals needed by FindSuperArcBetweenNodes
|
||||||
|
IndicesPortalType SuperarcsPortal;
|
||||||
|
};
|
||||||
|
|
||||||
|
|
||||||
|
/// ExecutionObject to generate a device object to use FindSuperArcBetweenNodes for the HierarchicalContourTree
|
||||||
|
class FindSuperArcBetweenNodes : public vtkm::cont::ExecutionObjectBase
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
/// constructor
|
||||||
|
VTKM_CONT
|
||||||
|
FindSuperArcBetweenNodes(const vtkm::worklet::contourtree_augmented::IdArrayType& superarcs)
|
||||||
|
: Superarcs(superarcs)
|
||||||
|
{
|
||||||
|
}
|
||||||
|
|
||||||
|
VTKM_CONT FindSuperArcBetweenNodesDeviceData
|
||||||
|
PrepareForExecution(vtkm::cont::DeviceAdapterId device, vtkm::cont::Token& token) const
|
||||||
|
{
|
||||||
|
return FindSuperArcBetweenNodesDeviceData(device, token, this->Superarcs);
|
||||||
|
}
|
||||||
|
|
||||||
|
private:
|
||||||
|
// Array portals needed by FindSuperArcBetweenNodes
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType Superarcs;
|
||||||
|
};
|
||||||
|
|
||||||
|
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
21
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/CMakeLists.txt
Normal file
21
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/CMakeLists.txt
Normal file
@ -0,0 +1,21 @@
|
|||||||
|
##============================================================================
|
||||||
|
## Copyright (c) Kitware, Inc.
|
||||||
|
## All rights reserved.
|
||||||
|
## See LICENSE.txt for details.
|
||||||
|
##
|
||||||
|
## This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
## the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
## PURPOSE. See the above copyright notice for more information.
|
||||||
|
##============================================================================
|
||||||
|
|
||||||
|
set(headers
|
||||||
|
CollapseBranchesPointerDoublingWorklet.h
|
||||||
|
CollapseBranchesWorklet.h
|
||||||
|
FindBestSupernodeWorklet.h
|
||||||
|
LocalBestUpDownByVolumeBestUpDownEdgeWorklet.h
|
||||||
|
LocalBestUpDownByVolumeInitSuperarcListWorklet.h
|
||||||
|
LocalBestUpDownByVolumeWorklet.h
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparator.h
|
||||||
|
)
|
||||||
|
|
||||||
|
vtkm_declare_headers(${headers})
|
94
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/CollapseBranchesPointerDoublingWorklet.h
Normal file
94
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/CollapseBranchesPointerDoublingWorklet.h
Normal file
@ -0,0 +1,94 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_collapse_branches_pointer_doubling_worklet_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_collapse_branches_pointer_doubling_worklet_h
|
||||||
|
|
||||||
|
#include <vtkm/worklet/WorkletMapField.h>
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
namespace hierarchical_volumetric_branch_decomposer
|
||||||
|
{
|
||||||
|
|
||||||
|
class CollapseBranchesPointerDoublingWorklet : public vtkm::worklet::WorkletMapField
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
/// Control signature for the worklet
|
||||||
|
using ControlSignature = void(WholeArrayInOut branchRoot);
|
||||||
|
using ExecutionSignature = void(InputIndex, _1);
|
||||||
|
using InputDomain = _1;
|
||||||
|
|
||||||
|
/// Default Constructor
|
||||||
|
VTKM_EXEC_CONT
|
||||||
|
CollapseBranchesPointerDoublingWorklet() {}
|
||||||
|
|
||||||
|
/// operator() of the workelt
|
||||||
|
template <typename InOutFieldPortalType>
|
||||||
|
VTKM_EXEC void operator()(const vtkm::Id superarc,
|
||||||
|
const InOutFieldPortalType& branchRootPortal) const
|
||||||
|
{
|
||||||
|
vtkm::Id branchRootVal1 = branchRootPortal.Get(superarc);
|
||||||
|
vtkm::Id branchRootVal2 = branchRootPortal.Get(branchRootPortal.Get(superarc));
|
||||||
|
if (branchRootVal1 != branchRootVal2)
|
||||||
|
{
|
||||||
|
branchRootPortal.Set(superarc, branchRootVal2);
|
||||||
|
}
|
||||||
|
} // operator()()
|
||||||
|
|
||||||
|
|
||||||
|
}; // CollapseBranchesPointerDoublingWorklet
|
||||||
|
|
||||||
|
} // namespace hierarchical_augmenter
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
244
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/CollapseBranchesWorklet.h
Normal file
244
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/CollapseBranchesWorklet.h
Normal file
@ -0,0 +1,244 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_collapse_branches_worklet_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_collapse_branches_worklet_h
|
||||||
|
|
||||||
|
#include <vtkm/worklet/WorkletMapField.h>
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
namespace hierarchical_volumetric_branch_decomposer
|
||||||
|
{
|
||||||
|
|
||||||
|
class CollapseBranchesWorklet : public vtkm::worklet::WorkletMapField
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
/// Control signature for the worklet
|
||||||
|
using ControlSignature = void(
|
||||||
|
FieldIn bestUpSupernode,
|
||||||
|
FieldIn bestDownSupernode,
|
||||||
|
// Execution objects from the hierarchical tree to use the FindRegularByGlobal function
|
||||||
|
ExecObject findRegularByGlobal,
|
||||||
|
// Execution objects from the hierarchical tree to use the FindSuperArcBetweenNodes, function
|
||||||
|
ExecObject findSuperArcBetweenNodes,
|
||||||
|
WholeArrayIn hierarchicalTreeRegular2supernode,
|
||||||
|
WholeArrayIn hierarchicalTreeWhichRound,
|
||||||
|
WholeArrayInOut branchRoot);
|
||||||
|
using ExecutionSignature = void(InputIndex, _1, _2, _3, _4, _5, _6, _7);
|
||||||
|
using InputDomain = _1;
|
||||||
|
|
||||||
|
/// Default Constructor
|
||||||
|
VTKM_EXEC_CONT
|
||||||
|
CollapseBranchesWorklet() {}
|
||||||
|
|
||||||
|
/// operator() of the workelt
|
||||||
|
template <typename ExecObjectType1,
|
||||||
|
typename ExecObjectType2,
|
||||||
|
typename InFieldPortalType,
|
||||||
|
typename InOutFieldPortalType>
|
||||||
|
VTKM_EXEC void operator()(
|
||||||
|
const vtkm::Id& supernode, // iteration index
|
||||||
|
const vtkm::Id& bestUpSupernodeId, // bestUpSupernode[supernode]
|
||||||
|
const vtkm::Id& bestDownSupernodeId, // bestDownSupernode[supernode]
|
||||||
|
const ExecObjectType1& findRegularByGlobal, // Execution object to call FindRegularByGlobal
|
||||||
|
const ExecObjectType2&
|
||||||
|
findSuperArcBetweenNodes, // Execution object to call FindSuperArcBetweenNodes
|
||||||
|
const InFieldPortalType& hierarchicalTreeRegular2supernodePortal,
|
||||||
|
const InFieldPortalType& hierarchicalTreeWhichRoundPortal,
|
||||||
|
const InOutFieldPortalType& branchRootPortal) const
|
||||||
|
{
|
||||||
|
// per supernode
|
||||||
|
// For each supernode, convert the best up into a superarc ID
|
||||||
|
// Note that the superarc may not belong to this rank, and that the superarc might be oriented either direction
|
||||||
|
// So we search for the best up global ID in the hierarchical tree
|
||||||
|
// If it does not exist, then this superarc does not belong to the rank, and can be ignored
|
||||||
|
// If it does exist and is a downwards superarc, we now have the correct ID
|
||||||
|
// If it does exist and is an upwards superarc, then the current supernode must have an ascending arc to it, and we're done
|
||||||
|
// Also do the same for the best down, then for each supernode, point the higher numbered at the lower
|
||||||
|
|
||||||
|
// if there is no best up, we're at an upper leaf and will not connect up two superarcs anyway, so we can skip the supernode
|
||||||
|
if (vtkm::worklet::contourtree_augmented::NoSuchElement(bestUpSupernodeId))
|
||||||
|
{
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
|
||||||
|
// Search for the regular ID of the best up supernode
|
||||||
|
vtkm::Id bestUpLocalRegularId = findRegularByGlobal.FindRegularByGlobal(bestUpSupernodeId);
|
||||||
|
|
||||||
|
// test to see whether it exists in this rank's hierarchical tree.
|
||||||
|
if (vtkm::worklet::contourtree_augmented::NoSuchElement(bestUpLocalRegularId))
|
||||||
|
{
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
|
||||||
|
// do the same for the best down
|
||||||
|
// Search for the regular ID of the best down supernode
|
||||||
|
vtkm::Id bestDownLocalRegularId = findRegularByGlobal.FindRegularByGlobal(bestDownSupernodeId);
|
||||||
|
|
||||||
|
// test to see whether it exists in this rank's hierarchical tree.
|
||||||
|
if (vtkm::worklet::contourtree_augmented::NoSuchElement(bestDownLocalRegularId))
|
||||||
|
{
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
|
||||||
|
// Convert regular to super ID
|
||||||
|
vtkm::Id bestUpLocalSupernodeId =
|
||||||
|
hierarchicalTreeRegular2supernodePortal.Get(bestUpLocalRegularId);
|
||||||
|
vtkm::Id bestDownLocalSupernodeId =
|
||||||
|
hierarchicalTreeRegular2supernodePortal.Get(bestDownLocalRegularId);
|
||||||
|
|
||||||
|
// local variable for the superarc IDs
|
||||||
|
vtkm::Id bestUpSuperarc =
|
||||||
|
findSuperArcBetweenNodes.FindSuperArcBetweenNodes(bestUpLocalSupernodeId, supernode);
|
||||||
|
vtkm::Id bestDownSuperarc =
|
||||||
|
findSuperArcBetweenNodes.FindSuperArcBetweenNodes(bestDownLocalSupernodeId, supernode);
|
||||||
|
|
||||||
|
// right: we now know the local IDs of both. Take the more junior and point it at the more senior - i.e. always orient inbound
|
||||||
|
// at the root supernode, the virtual root superarc will not be used, so we compare round/iteration/ID of the two superarcs anyway
|
||||||
|
// WARNING: it might appear that there is potential for loops in the algorithm &/or write collisions
|
||||||
|
// but there isn't because our superarcs are *ALWAYS* oriented inwards, as long as the test is correct ;->
|
||||||
|
|
||||||
|
// so to find seniority, &c., we retrieve round number.
|
||||||
|
// we don't need the iteration number, because a higher iteration (more senior) always has a higher ID for the same round
|
||||||
|
vtkm::Id bestUpRound = hierarchicalTreeWhichRoundPortal.Get(bestUpSuperarc);
|
||||||
|
vtkm::Id bestDownRound = hierarchicalTreeWhichRoundPortal.Get(bestDownSuperarc);
|
||||||
|
|
||||||
|
// more senior rounds are higher numbered
|
||||||
|
if ((bestUpRound > bestDownRound) ||
|
||||||
|
// within each round, more senior iterations are higher numbered
|
||||||
|
((bestUpRound == bestDownRound) && (bestUpSuperarc > bestDownSuperarc)))
|
||||||
|
{ // up is more senior
|
||||||
|
branchRootPortal.Set(bestDownSuperarc, bestUpSuperarc);
|
||||||
|
} // up is more senior
|
||||||
|
else // all other cases, go the opposite way - NB: assumes we will never have the same superarc twice
|
||||||
|
{ // down is more senior
|
||||||
|
branchRootPortal.Set(bestUpSuperarc, bestDownSuperarc);
|
||||||
|
} // down is more senior
|
||||||
|
|
||||||
|
/*
|
||||||
|
// This worklet implements the following loop.
|
||||||
|
for (vtkm::Id supernode = 0; supernode < hierarchicalTree.supernodes.size(); supernode++)
|
||||||
|
{ // per supernode
|
||||||
|
// For each supernode, convert the best up into a superarc ID
|
||||||
|
// Note that the superarc may not belong to this rank, and that the superarc might be oriented either direction
|
||||||
|
// So we search for the best up global ID in the hierarchical tree
|
||||||
|
// If it does not exist, then this superarc does not belong to the rank, and can be ignored
|
||||||
|
// If it does exist and is a downwards superarc, we now have the correct ID
|
||||||
|
// If it does exist and is an upwards superarc, then the current supernode must have an ascending arc to it, and we're done
|
||||||
|
// Also do the same for the best down, then for each supernode, point the higher numbered at the lower
|
||||||
|
|
||||||
|
vtkm::Id bestUpSupernodeID = bestUpSupernode[supernode];
|
||||||
|
|
||||||
|
// if there is no best up, we're at an upper leaf and will not connect up two superarcs anyway, so we can skip the supernode
|
||||||
|
if (noSuchElement(bestUpSupernodeID))
|
||||||
|
continue;
|
||||||
|
|
||||||
|
// Search for the regular ID of the best up supernode
|
||||||
|
vtkm::Id bestUpLocalRegularID = hierarchicalTree.FindRegularByGlobal(bestUpSupernodeID);
|
||||||
|
|
||||||
|
// test to see whether it exists in this rank's hierarchical tree.
|
||||||
|
if (noSuchElement(bestUpLocalRegularID))
|
||||||
|
continue;
|
||||||
|
|
||||||
|
// do the same for the best down
|
||||||
|
vtkm::Id bestDownSupernodeID = bestDownSupernode[supernode];
|
||||||
|
|
||||||
|
// Search for the regular ID of the best down supernode
|
||||||
|
vtkm::Id bestDownLocalRegularID = hierarchicalTree.FindRegularByGlobal(bestDownSupernodeID);
|
||||||
|
|
||||||
|
// test to see whether it exists in this rank's hierarchical tree.
|
||||||
|
if (noSuchElement(bestDownLocalRegularID))
|
||||||
|
continue;
|
||||||
|
|
||||||
|
// Convert regular to super ID
|
||||||
|
vtkm::Id bestUpLocalSupernodeID = hierarchicalTree.regular2supernode[bestUpLocalRegularID];
|
||||||
|
|
||||||
|
vtkm::Id bestDownLocalSupernodeID = hierarchicalTree.regular2supernode[bestDownLocalRegularID];
|
||||||
|
|
||||||
|
// local variable for the superarc IDs
|
||||||
|
vtkm::Id bestUpSuperarc = hierarchicalTree.FindSuperArcBetweenNodes(bestUpLocalSupernodeID, supernode);
|
||||||
|
|
||||||
|
vtkm::Id bestDownSuperarc = hierarchicalTree.FindSuperArcBetweenNodes(bestDownLocalSupernodeID, supernode);
|
||||||
|
|
||||||
|
// right: we now know the local IDs of both. Take the more junior and point it at the more senior - i.e. always orient inbound
|
||||||
|
// at the root supernode, the virtual root superarc will not be used, so we compare round/iteration/ID of the two superarcs anyway
|
||||||
|
// WARNING: it might appear that there is potential for loops in the algorithm &/or write collisions
|
||||||
|
// but there isn't because our superarcs are *ALWAYS* oriented inwards, as long as the test is correct ;->
|
||||||
|
|
||||||
|
// so to find seniority, &c., we retrieve round number.
|
||||||
|
// we don't need the iteration number, because a higher iteration (more senior) always has a higher ID for the same round
|
||||||
|
vtkm::Id bestUpRound = hierarchicalTree.whichRound[bestUpSuperarc];
|
||||||
|
vtkm::Id bestDownRound = hierarchicalTree.whichRound[bestDownSuperarc];
|
||||||
|
|
||||||
|
// more senior rounds are higher numbered
|
||||||
|
if ( (bestUpRound > bestDownRound) ||
|
||||||
|
// within each round, more senior iterations are higher numbered
|
||||||
|
( (bestUpRound == bestDownRound) && (bestUpSuperarc > bestDownSuperarc) ))
|
||||||
|
{ // up is more senior
|
||||||
|
branchRoot[bestDownSuperarc] = bestUpSuperarc;
|
||||||
|
} // up is more senior
|
||||||
|
else // all other cases, go the opposite way - NB: assumes we will never have the same superarc twice
|
||||||
|
{ // down is more senior
|
||||||
|
branchRoot[bestUpSuperarc] = bestDownSuperarc;
|
||||||
|
} // down is more senior
|
||||||
|
} // per supernode
|
||||||
|
*/
|
||||||
|
} // operator()()
|
||||||
|
|
||||||
|
|
||||||
|
}; // CollapseBranchesWorklet
|
||||||
|
|
||||||
|
} // namespace hierarchical_augmenter
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
97
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/FindBestSupernodeWorklet.h
Normal file
97
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/FindBestSupernodeWorklet.h
Normal file
@ -0,0 +1,97 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_combine_branch_decomposers_worklet_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_combine_branch_decomposers_worklet_h
|
||||||
|
|
||||||
|
#include <vtkm/worklet/WorkletMapField.h>
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
namespace hierarchical_volumetric_branch_decomposer
|
||||||
|
{
|
||||||
|
|
||||||
|
// Note: We use a template bool paramter for the tiebreak role choice instead of a variable
|
||||||
|
// so that the if statement can be optimized at compile time and we have fewer tests inside
|
||||||
|
// the worklet.
|
||||||
|
template <bool tieBreakGreaterThan>
|
||||||
|
class FindBestSupernodeWorklet : public vtkm::worklet::WorkletMapField
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
using ControlSignature = void(FieldIn incomingBestVolume,
|
||||||
|
FieldIn incomingBestSupernode,
|
||||||
|
FieldInOut bestVolume,
|
||||||
|
FieldInOut bestSupernode);
|
||||||
|
using ExecutionSignature = void(_1, _2, _3, _4);
|
||||||
|
|
||||||
|
VTKM_EXEC void operator()(vtkm::Id incomingBestVolume,
|
||||||
|
vtkm::Id incomingBestSupernode,
|
||||||
|
vtkm::Id& bestVolume,
|
||||||
|
vtkm::Id& bestSupernode) const
|
||||||
|
{
|
||||||
|
// this is the same test as the SuperArcVolumetricComparator, hard-coded since we're not
|
||||||
|
// dealing with an array here
|
||||||
|
if ((incomingBestVolume > bestVolume) ||
|
||||||
|
// don't forget the tiebreak rule
|
||||||
|
((incomingBestVolume == bestVolume) &&
|
||||||
|
(tieBreakGreaterThan ? (incomingBestSupernode > bestSupernode)
|
||||||
|
: (incomingBestSupernode < bestSupernode))))
|
||||||
|
{ // new one is better
|
||||||
|
bestVolume = incomingBestVolume;
|
||||||
|
bestSupernode = incomingBestSupernode;
|
||||||
|
} // new one is better
|
||||||
|
} // operator()()
|
||||||
|
}; // FindBestSupernodeWorklet
|
||||||
|
|
||||||
|
} // namespace hierarchical_augmenter
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
154
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeBestUpDownEdgeWorklet.h
Normal file
154
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeBestUpDownEdgeWorklet.h
Normal file
@ -0,0 +1,154 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_localbestupdownbyvolume_best_up_down_edge_worklet_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_localbestupdownbyvolume_best_up_down_edge_worklet_h
|
||||||
|
|
||||||
|
#include <vtkm/worklet/WorkletMapField.h>
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
namespace hierarchical_volumetric_branch_decomposer
|
||||||
|
{
|
||||||
|
|
||||||
|
/// Worklet used in HierarchicalAugmenter::CopyBaseRegularStructure for
|
||||||
|
/// finding the superparent for each node needed
|
||||||
|
class LocalBestUpDownByVolumeBestUpDownEdgeWorklet : public vtkm::worklet::WorkletMapField
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
/// Control signature for the worklet
|
||||||
|
/// NOTE: We require the input arrays (aside form the input domain) to be permutted by the
|
||||||
|
/// regularNodesNeeded input domain so that we can use FieldIn instead of WholeArrayIn
|
||||||
|
/// NOTE: We require ArrayHandleView for the output arrays of the range [numExistingRegular:end] so
|
||||||
|
/// that we can use FieldOut instead of requiring WholeArrayInOut
|
||||||
|
using ControlSignature = void(
|
||||||
|
FieldIn
|
||||||
|
permutedHierarchicalTreeSuperarcs, // hierarchicalTree.Superarcs permuted by actualSuperarcs
|
||||||
|
FieldIn permutedDependetValues, // dependentValues permuted by actualSuperarcs
|
||||||
|
FieldIn permutedIntrinsicValues, // intrinsicValues permuted by actualSuperarcs
|
||||||
|
FieldOut permutedUpVolume, // upVolume permuted by actualSuperarcs
|
||||||
|
FieldOut permitedDownVolume // downVolume permited by actualSuperarcs
|
||||||
|
);
|
||||||
|
using ExecutionSignature = void(_1, _2, _3, _4, _5);
|
||||||
|
using InputDomain = _1;
|
||||||
|
|
||||||
|
/// Default Constructor
|
||||||
|
VTKM_EXEC_CONT
|
||||||
|
LocalBestUpDownByVolumeBestUpDownEdgeWorklet(const vtkm::Id totalVolume)
|
||||||
|
: TotalVolume(totalVolume)
|
||||||
|
{
|
||||||
|
}
|
||||||
|
|
||||||
|
/// operator() of the workelt
|
||||||
|
template <typename FieldType>
|
||||||
|
VTKM_EXEC void operator()(
|
||||||
|
const vtkm::Id&
|
||||||
|
hierarchicalTreeSuperarc, // hierarchicalTree.superarcs[actualSuperarcs[InputIndex]]
|
||||||
|
const FieldType& dependentValue, // dependentValues[actualSuperarcs[InputIndex]]
|
||||||
|
const FieldType& intrinsicValue, // intrinsicValues[actualSuperarcs[InputIndex]]
|
||||||
|
vtkm::Id& upVolume, // upVolume[actualSuperarcs[InputIndex]]
|
||||||
|
vtkm::Id& downVolume // downVolume[actualSuperarcs[InputIndex]]
|
||||||
|
) const
|
||||||
|
{
|
||||||
|
// per actual superarc
|
||||||
|
// retrieve the superarc Id (down via the superarcId FieldIn parameter)
|
||||||
|
if (vtkm::worklet::contourtree_augmented::IsAscending(hierarchicalTreeSuperarc))
|
||||||
|
{ // ascending superarc
|
||||||
|
upVolume = dependentValue;
|
||||||
|
// at the inner end, dependent volume is the total in the subtree. Then there are vertices along the edge
|
||||||
|
// itself (intrinsic volume), including the supernode at the outer end
|
||||||
|
// So, to get the "dependent" volume in the other direction, we start
|
||||||
|
// with totalVolume - dependent, then subtract (intrinsic - 1)
|
||||||
|
downVolume = (this->TotalVolume - dependentValue) + (intrinsicValue - 1);
|
||||||
|
} // ascending superarc
|
||||||
|
else
|
||||||
|
{ // descending superarc
|
||||||
|
downVolume = dependentValue;
|
||||||
|
// at the inner end, dependent volume is the total in the subtree. Then there are vertices along the edge
|
||||||
|
// itself (intrinsic volume), including the supernode at the outer end
|
||||||
|
// So, to get the "dependent" volume in the other direction, we start
|
||||||
|
// with totalVolume - dependent, then subtract (intrinsic - 1)
|
||||||
|
upVolume = (this->TotalVolume - dependentValue) + (intrinsicValue - 1);
|
||||||
|
} // descending superarc
|
||||||
|
|
||||||
|
/* // This worklet implements the follwing loop
|
||||||
|
for (vtkm::Id actualSuperarc = 0; actualSuperarc < nActualSuperarcs; actualSuperarc++)
|
||||||
|
{ // per actual superarc
|
||||||
|
// retrieve the superarc ID
|
||||||
|
vtkm::Id superarcID = actualSuperarcs[actualSuperarc];
|
||||||
|
if (isAscending(hierarchicalTree.superarcs[superarcID]))
|
||||||
|
{ // ascending superarc
|
||||||
|
upVolume[superarcID] = dependentValues[superarcID];
|
||||||
|
// at the inner end, dependent volume is the total in the subtree. Then there are vertices along the edge itself (intrinsic volume), including the supernode at the outer end
|
||||||
|
// So, to get the "dependent" volume in the other direction, we start with totalVolume - dependent, then subtract (intrinsic - 1)
|
||||||
|
downVolume[superarcID] = (totalVolume - dependentValues[superarcID]) + (intrinsicValues[superarcID] - 1);
|
||||||
|
} // ascending superarc
|
||||||
|
else
|
||||||
|
{ // descending superarc
|
||||||
|
downVolume[superarcID] = dependentValues[superarcID];
|
||||||
|
// at the inner end, dependent volume is the total in the subtree. Then there are vertices along the edge itself (intrinsic volume), including the supernode at the outer end
|
||||||
|
// So, to get the "dependent" volume in the other direction, we start with totalVolume - dependent, then subtract (intrinsic - 1)
|
||||||
|
upVolume[superarcID] = (totalVolume - dependentValues[superarcID]) + (intrinsicValues[superarcID] - 1);
|
||||||
|
} // descending superarc
|
||||||
|
} // per superarc
|
||||||
|
*/
|
||||||
|
} // operator()()
|
||||||
|
|
||||||
|
private:
|
||||||
|
vtkm::Id TotalVolume;
|
||||||
|
|
||||||
|
}; // LocalBestUpDownByVolumeBestUpDownEdgeWorklet
|
||||||
|
|
||||||
|
} // namespace hierarchical_augmenter
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
104
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeInitSuperarcListWorklet.h
Normal file
104
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeInitSuperarcListWorklet.h
Normal file
@ -0,0 +1,104 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_localbestupdownbyvolume_init_superarc_list_worklet_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_localbestupdownbyvolume_init_superarc_list_worklet_h
|
||||||
|
|
||||||
|
#include <vtkm/worklet/WorkletMapField.h>
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
namespace hierarchical_volumetric_branch_decomposer
|
||||||
|
{
|
||||||
|
|
||||||
|
class LocalBestUpDownByVolumeInitSuperarcListWorklet : public vtkm::worklet::WorkletMapField
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
using ControlSignature = void(FieldIn hierarchicalTreeSuperarcs, FieldOut superarcList);
|
||||||
|
using ExecutionSignature = _2(InputIndex, _1);
|
||||||
|
using InputDomain = _1;
|
||||||
|
|
||||||
|
VTKM_EXEC vtkm::worklet::contourtree_augmented::EdgePair operator()(
|
||||||
|
vtkm::Id superarc, // InputIndex in [0, hierarchicalTree.Superarcs.GetNumberOfValues() - 1]
|
||||||
|
vtkm::Id hierarchicalTreeSuperarc // hierarchicalTree.Superarcs[superarc]
|
||||||
|
) const
|
||||||
|
{
|
||||||
|
using vtkm::worklet::contourtree_augmented::EdgePair;
|
||||||
|
using vtkm::worklet::contourtree_augmented::IsAscending;
|
||||||
|
using vtkm::worklet::contourtree_augmented::MaskedIndex;
|
||||||
|
|
||||||
|
if (IsAscending(hierarchicalTreeSuperarc))
|
||||||
|
{
|
||||||
|
return EdgePair(superarc, MaskedIndex(hierarchicalTreeSuperarc));
|
||||||
|
}
|
||||||
|
else
|
||||||
|
{
|
||||||
|
return EdgePair(MaskedIndex(hierarchicalTreeSuperarc), superarc);
|
||||||
|
}
|
||||||
|
|
||||||
|
/* // This worklet implements the follwing loop
|
||||||
|
for (vtkm::Id superarc = 0; superarc < nSuperarcs; superarc++)
|
||||||
|
{ // per superarc
|
||||||
|
if (isAscending(hierarchicalTree.superarcs[superarc]))
|
||||||
|
superarcList[superarc] = Edge(superarc, maskedIndex(hierarchicalTree.superarcs[superarc]));
|
||||||
|
else
|
||||||
|
superarcList[superarc] = Edge(maskedIndex(hierarchicalTree.superarcs[superarc]), superarc);
|
||||||
|
} // per superarc
|
||||||
|
*/
|
||||||
|
} // operator()()
|
||||||
|
|
||||||
|
}; // LocalBestUpDownByVolumeInitSuperarcListWorklet
|
||||||
|
|
||||||
|
} // namespace hierarchical_augmenter
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
229
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeWorklet.h
Normal file
229
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/LocalBestUpDownByVolumeWorklet.h
Normal file
@ -0,0 +1,229 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
// The PPP2 algorithm and software were jointly developed by
|
||||||
|
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
|
||||||
|
// Oliver Ruebel (LBNL)
|
||||||
|
//==============================================================================
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_local_best_updown_by_volume_worklet_h
|
||||||
|
#define vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_local_best_updown_by_volume_worklet_h
|
||||||
|
|
||||||
|
#include <vtkm/worklet/WorkletMapField.h>
|
||||||
|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
|
|
||||||
|
namespace vtkm
|
||||||
|
{
|
||||||
|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
namespace hierarchical_volumetric_branch_decomposer
|
||||||
|
{
|
||||||
|
|
||||||
|
/// Worklet used in HierarchicalAugmenter::CopyBaseRegularStructure for
|
||||||
|
/// finding the superparent for each node needed
|
||||||
|
|
||||||
|
/// Template parameter is bool indicating whether we are processing up- or
|
||||||
|
/// down best volumes and corresponding whether we need to use the low or
|
||||||
|
/// high end of the edge. Note: We make this a template paramter so that
|
||||||
|
/// the corresponding if statement can already be optimozed away during
|
||||||
|
/// compile time.
|
||||||
|
template <bool IsDown>
|
||||||
|
class LocalBestUpDownByVolumeWorklet : public vtkm::worklet::WorkletMapField
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
/// Control signature for the worklet
|
||||||
|
using ControlSignature = void(
|
||||||
|
WholeArrayIn actualSuperacrs,
|
||||||
|
WholeArrayIn superarcList, // superarc list
|
||||||
|
FieldIn
|
||||||
|
permutedUpDownVolume, // upVolumne if IsDown==True, or downVolume if IsDown==False. These are swapped as IsDown refers to the output arrays
|
||||||
|
WholeArrayIn hierarchicalTreeRegularNodeGlobalIds,
|
||||||
|
WholeArrayIn hierarchicalTreeSupernodes,
|
||||||
|
WholeArrayInOut
|
||||||
|
bestUpDownSupernode, // bestUpSupernode if IsDown==False, or bestDownSupernode if IsDown==True
|
||||||
|
WholeArrayInOut
|
||||||
|
bestUpDownVolume // bestUpVolume if IsDown==False, or bestDownVolume if IsDown==True
|
||||||
|
);
|
||||||
|
// TODO: Check if we need WholeArrayInOut here for the output arrays or if WholeArrayOut is sufficient
|
||||||
|
using ExecutionSignature = void(InputIndex, _1, _2, _3, _4, _5, _6, _7);
|
||||||
|
using InputDomain = _1;
|
||||||
|
|
||||||
|
/// Default Constructor
|
||||||
|
VTKM_EXEC_CONT
|
||||||
|
LocalBestUpDownByVolumeWorklet(const vtkm::Id numActualSuperarcs)
|
||||||
|
: NumberActualSuperarcs(numActualSuperarcs)
|
||||||
|
{
|
||||||
|
}
|
||||||
|
|
||||||
|
/// operator() of the workelt
|
||||||
|
template <typename InFieldPortalType1,
|
||||||
|
typename InFieldPortalType2,
|
||||||
|
typename InFieldPortalType3,
|
||||||
|
typename InFieldPortalType4,
|
||||||
|
typename OutFieldPortalType1,
|
||||||
|
typename OutFieldPortalType2>
|
||||||
|
VTKM_EXEC void operator()(const vtkm::Id& actualSuperarcIndex,
|
||||||
|
const InFieldPortalType1& actualSuperarcsPortal,
|
||||||
|
const InFieldPortalType2& superarcListPortal,
|
||||||
|
const vtkm::Id& upDownVolumeValue, // upDownVolume[superarcID]
|
||||||
|
const InFieldPortalType3& hierarchicalTreeRegularNodeGlobalIdsPortal,
|
||||||
|
const InFieldPortalType4& hierarchicalTreeSupernodesPortal,
|
||||||
|
const OutFieldPortalType1& bestUpDownSupernodePortal,
|
||||||
|
const OutFieldPortalType2& bestUpDownVolumePortal) const
|
||||||
|
{
|
||||||
|
// per actual superarc
|
||||||
|
vtkm::Id superarcId = actualSuperarcsPortal.Get(actualSuperarcIndex);
|
||||||
|
const vtkm::worklet::contourtree_augmented::EdgePair& edge = superarcListPortal.Get(superarcId);
|
||||||
|
|
||||||
|
if (IsDown)
|
||||||
|
{
|
||||||
|
// if it's the last one
|
||||||
|
if (actualSuperarcIndex == NumberActualSuperarcs - 1)
|
||||||
|
{ // last in array
|
||||||
|
bestUpDownSupernodePortal.Set(edge.second,
|
||||||
|
hierarchicalTreeRegularNodeGlobalIdsPortal.Get(
|
||||||
|
hierarchicalTreeSupernodesPortal.Get(edge.first)));
|
||||||
|
bestUpDownVolumePortal.Set(edge.second, upDownVolumeValue);
|
||||||
|
} // last in array
|
||||||
|
else
|
||||||
|
{ // not the last one
|
||||||
|
const vtkm::worklet::contourtree_augmented::EdgePair& nextEdge =
|
||||||
|
superarcListPortal.Get(actualSuperarcsPortal.Get(actualSuperarcIndex + 1));
|
||||||
|
// if the next edge belongs to another, we're the highest
|
||||||
|
if (nextEdge.second != edge.second)
|
||||||
|
{ // last in group
|
||||||
|
bestUpDownSupernodePortal.Set(edge.second,
|
||||||
|
hierarchicalTreeRegularNodeGlobalIdsPortal.Get(
|
||||||
|
hierarchicalTreeSupernodesPortal.Get(edge.first)));
|
||||||
|
bestUpDownVolumePortal.Set(edge.second, upDownVolumeValue);
|
||||||
|
} // last in group
|
||||||
|
} // not the last one
|
||||||
|
} // if(this->IsDown)
|
||||||
|
else // Processing the Up arrays. This is essentiall the same, but we need to use the lower end of the edge instead
|
||||||
|
{
|
||||||
|
// if it's the last one
|
||||||
|
if (actualSuperarcIndex == NumberActualSuperarcs - 1)
|
||||||
|
{ // last in array
|
||||||
|
bestUpDownSupernodePortal.Set(edge.first,
|
||||||
|
hierarchicalTreeRegularNodeGlobalIdsPortal.Get(
|
||||||
|
hierarchicalTreeSupernodesPortal.Get(edge.second)));
|
||||||
|
bestUpDownVolumePortal.Set(edge.first, upDownVolumeValue);
|
||||||
|
} // last in array
|
||||||
|
else
|
||||||
|
{ // not the last one
|
||||||
|
const vtkm::worklet::contourtree_augmented::EdgePair& nextEdge =
|
||||||
|
superarcListPortal.Get(actualSuperarcsPortal.Get(actualSuperarcIndex + 1));
|
||||||
|
// if the next edge belongs to another, we're the highest
|
||||||
|
if (nextEdge.first != edge.first)
|
||||||
|
{ // best in group
|
||||||
|
bestUpDownSupernodePortal.Set(edge.first,
|
||||||
|
hierarchicalTreeRegularNodeGlobalIdsPortal.Get(
|
||||||
|
hierarchicalTreeSupernodesPortal.Get(edge.second)));
|
||||||
|
bestUpDownVolumePortal.Set(edge.first, upDownVolumeValue);
|
||||||
|
} // best in group
|
||||||
|
} // not the last one
|
||||||
|
} // else (if(this->isDown))
|
||||||
|
/*
|
||||||
|
// This worklet implements the following loop. Depending on whether we are working with the Up- or DownVolumes
|
||||||
|
// This function implements one of the following logic
|
||||||
|
// II B 2. Per vertex, best superarc writes to the best downward array
|
||||||
|
for (vtkm::Id actualSuperarc = 0; actualSuperarc < nActualSuperarcs; actualSuperarc++)
|
||||||
|
{ // per actual superarc
|
||||||
|
vtkm::Id superarcID = actualSuperarcs[actualSuperarc];
|
||||||
|
Edge &edge = superarcList[superarcID];
|
||||||
|
// if it's the last one
|
||||||
|
if (actualSuperarc == nActualSuperarcs-1)
|
||||||
|
{ // last in array
|
||||||
|
bestDownSupernode[edge.high] = hierarchicalTree.regularNodeGlobalIDs[hierarchicalTree.supernodes[edge.low]];
|
||||||
|
bestDownVolume[edge.high] = upVolume[superarcID];
|
||||||
|
} // last in array
|
||||||
|
else
|
||||||
|
{ // not the last one
|
||||||
|
Edge &nextEdge = superarcList[actualSuperarcs[actualSuperarc+1]];
|
||||||
|
// if the next edge belongs to another, we're the highest
|
||||||
|
if (nextEdge.high != edge.high)
|
||||||
|
{ // last in group
|
||||||
|
bestDownSupernode[edge.high] = hierarchicalTree.regularNodeGlobalIDs[hierarchicalTree.supernodes[edge.low]];
|
||||||
|
bestDownVolume[edge.high] = upVolume[superarcID];
|
||||||
|
} // last in group
|
||||||
|
} // not the last one
|
||||||
|
} // per actual superarc
|
||||||
|
*/
|
||||||
|
/* // Or in the Up case we have. THe main difference is the we either use the Up or Down Volume and
|
||||||
|
// and we following here the low end of the edge and top end of the edge in the other case
|
||||||
|
|
||||||
|
for (vtkm::Id actualSuperarc = 0; actualSuperarc < nActualSuperarcs; actualSuperarc++)
|
||||||
|
{ // per actual superarc
|
||||||
|
vtkm::Id superarcID = actualSuperarcs[actualSuperarc];
|
||||||
|
Edge &edge = superarcList[superarcID];
|
||||||
|
// if it's the last one
|
||||||
|
if (actualSuperarc == nActualSuperarcs-1)
|
||||||
|
{ // last in array
|
||||||
|
bestUpSupernode[edge.low] = hierarchicalTree.regularNodeGlobalIDs[hierarchicalTree.supernodes[edge.high]];
|
||||||
|
bestUpVolume[edge.low] = downVolume[superarcID];
|
||||||
|
} // last in array
|
||||||
|
else
|
||||||
|
{ // not the last one
|
||||||
|
Edge &nextEdge = superarcList[actualSuperarcs[actualSuperarc+1]];
|
||||||
|
// if the next edge belongs to another, we're the highest
|
||||||
|
if (nextEdge.low != edge.low)
|
||||||
|
{ // best in group
|
||||||
|
bestUpSupernode[edge.low] = hierarchicalTree.regularNodeGlobalIDs[hierarchicalTree.supernodes[edge.high]];
|
||||||
|
bestUpVolume[edge.low] = downVolume[superarcID];
|
||||||
|
} // best in group
|
||||||
|
} // not the last one
|
||||||
|
|
||||||
|
} // per actual superarc
|
||||||
|
*/
|
||||||
|
} // operator()()
|
||||||
|
|
||||||
|
private:
|
||||||
|
vtkm::Id NumberActualSuperarcs;
|
||||||
|
|
||||||
|
}; // LocalBestUpDownByVolumeWorklet
|
||||||
|
|
||||||
|
} // namespace hierarchical_augmenter
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
247
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/SuperArcVolumetricComparatorIndirectGlobalIdComparator.h
Normal file
247
vtkm/worklet/contourtree_distributed/hierarchical_volumetric_branch_decomposer/SuperArcVolumetricComparatorIndirectGlobalIdComparator.h
Normal file
@ -0,0 +1,247 @@
|
|||||||
|
//============================================================================
|
||||||
|
// Copyright (c) Kitware, Inc.
|
||||||
|
// All rights reserved.
|
||||||
|
// See LICENSE.txt for details.
|
||||||
|
//
|
||||||
|
// This software is distributed WITHOUT ANY WARRANTY; without even
|
||||||
|
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
|
||||||
|
// PURPOSE. See the above copyright notice for more information.
|
||||||
|
//============================================================================
|
||||||
|
// Copyright (c) 2018, The Regents of the University of California, through
|
||||||
|
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
|
||||||
|
// from the U.S. Dept. of Energy). All rights reserved.
|
||||||
|
//
|
||||||
|
// Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
// are permitted provided that the following conditions are met:
|
||||||
|
//
|
||||||
|
// (1) Redistributions of source code must retain the above copyright notice, this
|
||||||
|
// list of conditions and the following disclaimer.
|
||||||
|
//
|
||||||
|
// (2) Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
// this list of conditions and the following disclaimer in the documentation
|
||||||
|
// and/or other materials provided with the distribution.
|
||||||
|
//
|
||||||
|
// (3) Neither the name of the University of California, Lawrence Berkeley National
|
||||||
|
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
|
||||||
|
// used to endorse or promote products derived from this software without
|
||||||
|
// specific prior written permission.
|
||||||
|
//
|
||||||
|
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
|
||||||
|
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||||
|
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||||
|
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||||
|
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
|
||||||
|
// OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
//
|
||||||
|
//=============================================================================
|
||||||
|
//
|
||||||
|
// SuperArcVolumetricComparatorIndirectGlobalID.h - a comparator for sorting superarcs by volume
|
||||||
|
// Has to take a flag for high end vs. low end sorting
|
||||||
|
// Also, this version takes supernode IDs rather than global IDs, so has an extra indirection
|
||||||
|
//
|
||||||
|
//=======================================================================================
|
||||||
|
//
|
||||||
|
// COMMENTS:
|
||||||
|
//
|
||||||
|
// A comparator that sorts superarc pairs by:
|
||||||
|
// 1. ID of low end vertex
|
||||||
|
// 2. volumetric measure at low end
|
||||||
|
// 3. global index of upper end, OR
|
||||||
|
//
|
||||||
|
// the same for the higher end.
|
||||||
|
//
|
||||||
|
// Notice that 2. only applies if two edges share a lower end and have the same volume.
|
||||||
|
// We then look at the index at the upper end to see which is "furthest" from the low end
|
||||||
|
//
|
||||||
|
//=======================================================================================
|
||||||
|
|
||||||
|
|
||||||
|
#ifndef vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_superarc_volumetric_comparator_indirect_globalid_comparator_h
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||||||
|
#define vtk_m_worklet_contourtree_distributed_hierarchical_volumetric_branch_decomposer_superarc_volumetric_comparator_indirect_globalid_comparator_h
|
||||||
|
|
||||||
|
#include <vtkm/cont/ArrayHandle.h>
|
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|
#include <vtkm/cont/ExecutionObjectBase.h>
|
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|
#include <vtkm/worklet/contourtree_augmented/Types.h>
|
||||||
|
|
||||||
|
namespace vtkm
|
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|
{
|
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|
namespace worklet
|
||||||
|
{
|
||||||
|
namespace contourtree_distributed
|
||||||
|
{
|
||||||
|
namespace hierarchical_volumetric_branch_decomposer
|
||||||
|
{
|
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|
|
||||||
|
|
||||||
|
/// Implementation of the comparator for the SuperArcVolumetricComparatorIndirectGlobalId ExecutionObject
|
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|
class SuperArcVolumetricComparatorIndirectGlobalIdComparatorImpl
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
using IdArrayPortalType =
|
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|
typename vtkm::worklet::contourtree_augmented::IdArrayType::ReadPortalType;
|
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|
using EdgePairArrayPortalType =
|
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|
typename vtkm::worklet::contourtree_augmented::EdgePairArray::ReadPortalType;
|
||||||
|
|
||||||
|
// constructor
|
||||||
|
VTKM_CONT
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparatorImpl(
|
||||||
|
IdArrayPortalType weightPortal,
|
||||||
|
EdgePairArrayPortalType superarcListPortal,
|
||||||
|
IdArrayPortalType globalIdPortal,
|
||||||
|
bool pairsAtLowEnd)
|
||||||
|
: WeightPortal(weightPortal)
|
||||||
|
, SuperarcListPortal(superarcListPortal)
|
||||||
|
, GlobalIdPortal(globalIdPortal)
|
||||||
|
, PairsAtLowEnd(pairsAtLowEnd)
|
||||||
|
{ // constructor
|
||||||
|
} // constructor
|
||||||
|
|
||||||
|
// () operator - gets called to do comparison
|
||||||
|
VTKM_EXEC
|
||||||
|
bool operator()(const vtkm::Id& left, const vtkm::Id& right) const
|
||||||
|
{ // operator()
|
||||||
|
// get local references to the edge details
|
||||||
|
vtkm::worklet::contourtree_augmented::EdgePair edgeLeft = this->SuperarcListPortal.Get(left);
|
||||||
|
vtkm::worklet::contourtree_augmented::EdgePair edgeRight = this->SuperarcListPortal.Get(right);
|
||||||
|
|
||||||
|
if (this->PairsAtLowEnd)
|
||||||
|
{ // pairs at low end
|
||||||
|
// test by low end ID
|
||||||
|
if (edgeLeft.first < edgeRight.first)
|
||||||
|
{
|
||||||
|
return true;
|
||||||
|
}
|
||||||
|
if (edgeLeft.first > edgeRight.first)
|
||||||
|
{
|
||||||
|
return false;
|
||||||
|
}
|
||||||
|
|
||||||
|
// test by volumetric measure
|
||||||
|
vtkm::Id weightLeft = this->WeightPortal.Get(left);
|
||||||
|
vtkm::Id weightRight = this->WeightPortal.Get(right);
|
||||||
|
if (weightLeft < weightRight)
|
||||||
|
return true;
|
||||||
|
if (weightLeft > weightRight)
|
||||||
|
return false;
|
||||||
|
|
||||||
|
// test by the global ID - we were past a supernode ID, so there's an
|
||||||
|
// extra level of indirection
|
||||||
|
vtkm::Id globalIdLeftEdgeSecond = this->GlobalIdPortal.Get(edgeLeft.second);
|
||||||
|
vtkm::Id globalIdRightEdgeSecond = this->GlobalIdPortal.Get(edgeRight.second);
|
||||||
|
if (globalIdLeftEdgeSecond < globalIdRightEdgeSecond)
|
||||||
|
{
|
||||||
|
return true;
|
||||||
|
}
|
||||||
|
if (globalIdLeftEdgeSecond > globalIdRightEdgeSecond)
|
||||||
|
{
|
||||||
|
return false;
|
||||||
|
}
|
||||||
|
|
||||||
|
// fallback
|
||||||
|
return false;
|
||||||
|
} // pairs at low end
|
||||||
|
else
|
||||||
|
{ // pairs at high end
|
||||||
|
// test by high end ID
|
||||||
|
if (edgeLeft.second < edgeRight.second)
|
||||||
|
{
|
||||||
|
return true;
|
||||||
|
}
|
||||||
|
if (edgeLeft.second > edgeRight.second)
|
||||||
|
{
|
||||||
|
return false;
|
||||||
|
}
|
||||||
|
|
||||||
|
// test by volumetric measure
|
||||||
|
vtkm::Id weightLeft = this->WeightPortal.Get(left);
|
||||||
|
vtkm::Id weightRight = this->WeightPortal.Get(right);
|
||||||
|
if (weightLeft < weightRight)
|
||||||
|
{
|
||||||
|
return true;
|
||||||
|
}
|
||||||
|
if (weightLeft > weightRight)
|
||||||
|
{
|
||||||
|
return false;
|
||||||
|
}
|
||||||
|
|
||||||
|
// test by the global ID - we were past a supernode ID, so there's an
|
||||||
|
// extra level of indirection
|
||||||
|
// Note the reversal from above - we want the greatest difference, not
|
||||||
|
// the greatest value
|
||||||
|
vtkm::Id globalIdLeftEdgeFirst = this->GlobalIdPortal.Get(edgeLeft.first);
|
||||||
|
vtkm::Id globalIdRightEdgeFirst = this->GlobalIdPortal.Get(edgeRight.first);
|
||||||
|
if (globalIdLeftEdgeFirst > globalIdRightEdgeFirst)
|
||||||
|
{
|
||||||
|
return true;
|
||||||
|
}
|
||||||
|
if (globalIdLeftEdgeFirst < globalIdRightEdgeFirst)
|
||||||
|
{
|
||||||
|
return false;
|
||||||
|
}
|
||||||
|
|
||||||
|
// fallback
|
||||||
|
return false;
|
||||||
|
} // pairs at high end
|
||||||
|
} // operator()
|
||||||
|
|
||||||
|
private:
|
||||||
|
IdArrayPortalType WeightPortal;
|
||||||
|
EdgePairArrayPortalType SuperarcListPortal;
|
||||||
|
IdArrayPortalType GlobalIdPortal;
|
||||||
|
bool PairsAtLowEnd;
|
||||||
|
}; // SuperArcVolumetricComparatorIndirectGlobalIdComparatorImpl
|
||||||
|
|
||||||
|
|
||||||
|
/// Execution object for Compartor used in HierarchicalVolumetricBranchDecomposer<FieldType>::LocalBestUpDownByVolume.
|
||||||
|
/// The comparator is used to sort superarc pairs by:
|
||||||
|
/// 1. ID of low end vertex
|
||||||
|
/// 2. volumetric measure at low end
|
||||||
|
/// 3. global index of upper end, OR
|
||||||
|
/// the same for the higher end. Notice that 2. only applies if two edges share a lower end and have the same volume.
|
||||||
|
/// We then look at the index at the upper end to see which is "furthest" from the low end
|
||||||
|
class SuperArcVolumetricComparatorIndirectGlobalIdComparator
|
||||||
|
: public vtkm::cont::ExecutionObjectBase
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
// constructor - takes vectors as parameters
|
||||||
|
VTKM_CONT
|
||||||
|
SuperArcVolumetricComparatorIndirectGlobalIdComparator(
|
||||||
|
const vtkm::worklet::contourtree_augmented::IdArrayType& weight,
|
||||||
|
const vtkm::worklet::contourtree_augmented::EdgePairArray& superarcList,
|
||||||
|
const vtkm::worklet::contourtree_augmented::IdArrayType& globalId,
|
||||||
|
bool pairsAtLowEnd)
|
||||||
|
: Weight(weight)
|
||||||
|
, SuperarcList(superarcList)
|
||||||
|
, GlobalId(globalId)
|
||||||
|
, PairsAtLowEnd(pairsAtLowEnd)
|
||||||
|
{ // constructor
|
||||||
|
} // constructor
|
||||||
|
|
||||||
|
/// Create a SuperArcVolumetricComparatorIndirectGlobalIdComparatorImpl object for use in the sort or worklet
|
||||||
|
VTKM_CONT SuperArcVolumetricComparatorIndirectGlobalIdComparatorImpl
|
||||||
|
PrepareForExecution(vtkm::cont::DeviceAdapterId device, vtkm::cont::Token& token) const
|
||||||
|
{
|
||||||
|
return SuperArcVolumetricComparatorIndirectGlobalIdComparatorImpl(
|
||||||
|
this->Weight.PrepareForInput(device, token),
|
||||||
|
this->SuperarcList.PrepareForInput(device, token),
|
||||||
|
this->GlobalId.PrepareForInput(device, token),
|
||||||
|
this->PairsAtLowEnd);
|
||||||
|
}
|
||||||
|
|
||||||
|
private:
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType Weight;
|
||||||
|
vtkm::worklet::contourtree_augmented::EdgePairArray SuperarcList;
|
||||||
|
vtkm::worklet::contourtree_augmented::IdArrayType GlobalId;
|
||||||
|
bool PairsAtLowEnd;
|
||||||
|
}; // SuperArcVolumetricComparatorIndirectGlobalIdComparator
|
||||||
|
|
||||||
|
} // namespace hierarchical_volumetric_branch_decomposer
|
||||||
|
} // namespace contourtree_distributed
|
||||||
|
} // namespace worklet
|
||||||
|
} // namespace vtkm
|
||||||
|
|
||||||
|
#endif
|
Loading…
Reference in New Issue
Block a user