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Merge topic 'restore_graph_connectivity_test'
dd4051d40 retore unit test for graph connectivityu Acked-by: Kitware Robot <kwrobot@kitware.com> Acked-by: Kenneth Moreland <morelandkd@ornl.gov> Merge-request: !2822
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commit
b44b30ddb2
@ -14,6 +14,7 @@ set(unit_tests
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set(unit_tests_device
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UnitTestCellSetConnectivityFilter.cxx # uses vtkm::cont::Algorithm
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UnitTestGraphConnectivityWorklet.cxx
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)
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set(libraries
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@ -0,0 +1,141 @@
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//============================================================================
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// Copyright (c) Kitware, Inc.
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// All rights reserved.
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// See LICENSE.txt for details.
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//
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// This software is distributed WITHOUT ANY WARRANTY; without even
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// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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// PURPOSE. See the above copyright notice for more information.
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//============================================================================
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#include <vtkm/cont/testing/Testing.h>
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#include <vtkm/filter/connected_components/worklet/GraphConnectivity.h>
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class AdjacentDifference : public vtkm::worklet::WorkletMapField
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{
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public:
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using ControlSignature = void(FieldIn index, WholeArrayIn counts, FieldOut outputCount);
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using ExecutionSignature = void(_1, _2, _3);
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using InputDomain = _1;
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template <typename WholeArrayType>
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VTKM_EXEC void operator()(const vtkm::Id& index,
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const WholeArrayType& counts,
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int& difference) const
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{
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difference = counts.Get(index + 1) - counts.Get(index);
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}
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};
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class SameComponent : public vtkm::worklet::WorkletMapField
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{
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public:
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using ControlSignature = void(FieldIn start,
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FieldIn degree,
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WholeArrayIn conns,
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WholeArrayIn comps,
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AtomicArrayInOut same);
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using ExecutionSignature = void(WorkIndex, _1, _2, _3, _4, _5);
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template <typename Conn, typename Comp, typename AtomicSame>
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VTKM_EXEC void operator()(vtkm::Id index,
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int start,
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int degree,
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const Conn& conns,
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const Comp& comps,
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AtomicSame& same) const
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{
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for (vtkm::Id offset = start; offset < start + degree; ++offset)
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{
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vtkm::Id neighbor = conns.Get(offset);
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if (comps.Get(index) != comps.Get(neighbor))
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{
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same.Set(0, 0);
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}
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}
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}
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};
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class TestGraphConnectivity
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{
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public:
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void TestECL_CC(const std::string& filename, int ncomps) const
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{
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auto pathname =
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vtkm::cont::testing::Testing::GetTestDataBasePath() + "/third_party/ecl_cc/" + filename;
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std::ifstream stream(pathname, std::ios_base::in | std::ios_base::binary);
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int nnodes;
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stream.read(reinterpret_cast<char*>(&nnodes), sizeof(nnodes));
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int nedges;
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stream.read(reinterpret_cast<char*>(&nedges), sizeof(nedges));
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// CSR, there is one more element in offsets than the actual number of nodes.
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std::vector<int> offsets(nnodes + 1);
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std::vector<int> conns(nedges);
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stream.read(reinterpret_cast<char*>(offsets.data()), (nnodes + 1) * sizeof(int));
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stream.read(reinterpret_cast<char*>(conns.data()), nedges * sizeof(int));
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vtkm::cont::ArrayHandle<int> counts_h;
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vtkm::cont::Invoker invoke;
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invoke(AdjacentDifference{},
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vtkm::cont::make_ArrayHandleCounting(0, 1, nnodes),
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vtkm::cont::make_ArrayHandle<int>(offsets, vtkm::CopyFlag::On),
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counts_h);
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offsets.pop_back();
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vtkm::cont::ArrayHandle<int> offsets_h =
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vtkm::cont::make_ArrayHandle(offsets, vtkm::CopyFlag::On);
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vtkm::cont::ArrayHandle<int> conns_h = vtkm::cont::make_ArrayHandle(conns, vtkm::CopyFlag::Off);
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vtkm::cont::ArrayHandle<vtkm::Id> comps_h;
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vtkm::worklet::connectivity::GraphConnectivity().Run(counts_h, offsets_h, conns_h, comps_h);
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VTKM_TEST_ASSERT(vtkm::cont::Algorithm::Reduce(comps_h, vtkm::Id(0), vtkm::Maximum{}) ==
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ncomps - 1,
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"number of components mismatch");
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vtkm::cont::ArrayHandle<vtkm::UInt32> atomicSame;
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atomicSame.Allocate(1);
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atomicSame.WritePortal().Set(0, 1);
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invoke(SameComponent{}, offsets_h, counts_h, conns_h, comps_h, atomicSame);
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VTKM_TEST_ASSERT(atomicSame.ReadPortal().Get(0) == 1,
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"Neighboring nodes don't have the same component id");
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}
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void TestECL_CC_DataSets() const { TestECL_CC("internet.egr", 1); }
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void TestSimpleGraph() const
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{
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vtkm::cont::ArrayHandle<vtkm::Id> counts_h =
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vtkm::cont::make_ArrayHandle<vtkm::Id>({ 1, 1, 2, 2, 2 });
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vtkm::cont::ArrayHandle<vtkm::Id> offsets_h =
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vtkm::cont::make_ArrayHandle<vtkm::Id>({ 0, 1, 2, 4, 6 });
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vtkm::cont::ArrayHandle<vtkm::Id> conn_h =
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vtkm::cont::make_ArrayHandle<vtkm::Id>({ 2, 4, 0, 3, 2, 4, 1, 3 });
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vtkm::cont::ArrayHandle<vtkm::Id> comps;
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vtkm::worklet::connectivity::GraphConnectivity().Run(counts_h, offsets_h, conn_h, comps);
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for (int i = 0; i < comps.GetNumberOfValues(); i++)
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{
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VTKM_TEST_ASSERT(comps.ReadPortal().Get(i) == 0, "Components has unexpected value.");
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}
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}
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void operator()() const
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{
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TestSimpleGraph();
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TestECL_CC_DataSets();
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}
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};
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int UnitTestGraphConnectivityWorklet(int argc, char* argv[])
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{
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return vtkm::cont::testing::Testing::Run(TestGraphConnectivity{}, argc, argv);
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}
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