mirror of
https://gitlab.kitware.com/vtk/vtk-m
synced 2024-09-08 13:23:51 +00:00
Merge branch 'sl_comm_probe' into 'master'
Draft: Use async termination. See merge request vtk/vtk-m!3182
This commit is contained in:
commit
d804d0fcdf
@ -15,6 +15,7 @@
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#include <vtkm/cont/ErrorFilterExecution.h>
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#include <vtkm/cont/ErrorFilterExecution.h>
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#include <vtkm/filter/Filter.h>
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#include <vtkm/filter/Filter.h>
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#include <vtkm/filter/flow/FlowTypes.h>
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#include <vtkm/filter/flow/FlowTypes.h>
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#include <vtkm/filter/flow/internal/BoundsMap.h>
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#include <vtkm/filter/flow/vtkm_filter_flow_export.h>
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#include <vtkm/filter/flow/vtkm_filter_flow_export.h>
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namespace vtkm
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namespace vtkm
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@ -104,7 +105,7 @@ protected:
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bool BlockIdsSet = false;
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bool BlockIdsSet = false;
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std::vector<vtkm::Id> BlockIds;
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std::vector<vtkm::Id> BlockIds;
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vtkm::filter::flow::internal::BoundsMap BoundsMap;
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vtkm::Id NumberOfSteps = 0;
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vtkm::Id NumberOfSteps = 0;
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vtkm::cont::UnknownArrayHandle Seeds;
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vtkm::cont::UnknownArrayHandle Seeds;
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vtkm::filter::flow::IntegrationSolverType SolverType =
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vtkm::filter::flow::IntegrationSolverType SolverType =
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@ -58,13 +58,15 @@ FilterParticleAdvectionSteadyState<Derived>::DoExecutePartitions(
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DataSetIntegratorSteadyState<ParticleType, FieldType, TerminationType, AnalysisType>;
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DataSetIntegratorSteadyState<ParticleType, FieldType, TerminationType, AnalysisType>;
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this->ValidateOptions();
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this->ValidateOptions();
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if (this->BlockIdsSet)
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this->BoundsMap = vtkm::filter::flow::internal::BoundsMap(input, this->BlockIds);
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else
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this->BoundsMap = vtkm::filter::flow::internal::BoundsMap(input);
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vtkm::filter::flow::internal::BoundsMap boundsMap(input);
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std::vector<DSIType> dsi;
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std::vector<DSIType> dsi;
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for (vtkm::Id i = 0; i < input.GetNumberOfPartitions(); i++)
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for (vtkm::Id i = 0; i < input.GetNumberOfPartitions(); i++)
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{
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{
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vtkm::Id blockId = boundsMap.GetLocalBlockId(i);
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vtkm::Id blockId = this->BoundsMap.GetLocalBlockId(i);
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auto dataset = input.GetPartition(i);
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auto dataset = input.GetPartition(i);
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// Build the field for the current dataset
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// Build the field for the current dataset
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@ -78,7 +80,7 @@ FilterParticleAdvectionSteadyState<Derived>::DoExecutePartitions(
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}
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}
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vtkm::filter::flow::internal::ParticleAdvector<DSIType> pav(
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vtkm::filter::flow::internal::ParticleAdvector<DSIType> pav(
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boundsMap, dsi, this->UseThreadedAlgorithm, this->UseAsynchronousCommunication);
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this->BoundsMap, dsi, this->UseThreadedAlgorithm, this->UseAsynchronousCommunication);
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vtkm::cont::ArrayHandle<ParticleType> particles;
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vtkm::cont::ArrayHandle<ParticleType> particles;
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this->Seeds.AsArrayHandle(particles);
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this->Seeds.AsArrayHandle(particles);
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@ -55,12 +55,15 @@ FilterParticleAdvectionUnsteadyState<Derived>::DoExecutePartitions(
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using DSIType = vtkm::filter::flow::internal::
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using DSIType = vtkm::filter::flow::internal::
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DataSetIntegratorUnsteadyState<ParticleType, FieldType, TerminationType, AnalysisType>;
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DataSetIntegratorUnsteadyState<ParticleType, FieldType, TerminationType, AnalysisType>;
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|
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vtkm::filter::flow::internal::BoundsMap boundsMap(input);
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if (this->BlockIdsSet)
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this->BoundsMap = vtkm::filter::flow::internal::BoundsMap(input, this->BlockIds);
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else
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this->BoundsMap = vtkm::filter::flow::internal::BoundsMap(input);
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std::vector<DSIType> dsi;
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std::vector<DSIType> dsi;
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for (vtkm::Id i = 0; i < input.GetNumberOfPartitions(); i++)
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for (vtkm::Id i = 0; i < input.GetNumberOfPartitions(); i++)
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{
|
{
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vtkm::Id blockId = boundsMap.GetLocalBlockId(i);
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vtkm::Id blockId = this->BoundsMap.GetLocalBlockId(i);
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auto ds1 = input.GetPartition(i);
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auto ds1 = input.GetPartition(i);
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auto ds2 = this->Input2.GetPartition(i);
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auto ds2 = this->Input2.GetPartition(i);
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|
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@ -85,7 +88,7 @@ FilterParticleAdvectionUnsteadyState<Derived>::DoExecutePartitions(
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analysis);
|
analysis);
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}
|
}
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vtkm::filter::flow::internal::ParticleAdvector<DSIType> pav(
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vtkm::filter::flow::internal::ParticleAdvector<DSIType> pav(
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boundsMap, dsi, this->UseThreadedAlgorithm, this->UseAsynchronousCommunication);
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this->BoundsMap, dsi, this->UseThreadedAlgorithm, this->UseAsynchronousCommunication);
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|
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vtkm::cont::ArrayHandle<ParticleType> particles;
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vtkm::cont::ArrayHandle<ParticleType> particles;
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this->Seeds.AsArrayHandle(particles);
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this->Seeds.AsArrayHandle(particles);
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|
@ -15,6 +15,10 @@
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#include <vtkm/filter/flow/internal/BoundsMap.h>
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#include <vtkm/filter/flow/internal/BoundsMap.h>
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#include <vtkm/filter/flow/internal/DataSetIntegrator.h>
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#include <vtkm/filter/flow/internal/DataSetIntegrator.h>
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#include <vtkm/filter/flow/internal/ParticleMessenger.h>
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#include <vtkm/filter/flow/internal/ParticleMessenger.h>
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#ifdef VTKM_ENABLE_MPI
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#include <vtkm/thirdparty/diy/diy.h>
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#include <vtkm/thirdparty/diy/mpi-cast.h>
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#endif
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namespace vtkm
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namespace vtkm
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{
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{
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@ -25,6 +29,87 @@ namespace flow
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namespace internal
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namespace internal
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{
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{
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class AdvectAlgorithmTerminator
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{
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public:
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#ifdef VTKM_ENABLE_MPI
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AdvectAlgorithmTerminator(vtkmdiy::mpi::communicator& comm)
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: MPIComm(vtkmdiy::mpi::mpi_cast(comm.handle()))
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#else
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AdvectAlgorithmTerminator(vtkmdiy::mpi::communicator& vtkmNotUsed(comm))
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#endif
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{
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}
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void AddWork()
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{
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#ifdef VTKM_ENABLE_MPI
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this->Dirty = 1;
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#endif
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}
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bool Done() const { return this->State == AdvectAlgorithmTerminatorState::DONE; }
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void Control(bool haveLocalWork)
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{
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#ifdef VTKM_ENABLE_MPI
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if (this->State == STATE_0 && !haveLocalWork)
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{
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MPI_Ibarrier(this->MPIComm, &this->StateReq);
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this->Dirty = 0;
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this->State = STATE_1;
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}
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else if (this->State == STATE_1)
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{
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MPI_Status status;
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int flag;
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MPI_Test(&this->StateReq, &flag, &status);
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if (flag == 1)
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{
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int localDirty = this->Dirty;
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MPI_Iallreduce(
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&localDirty, &this->AllDirty, 1, MPI_INT, MPI_LOR, this->MPIComm, &this->StateReq);
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this->State = STATE_2;
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}
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}
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else if (this->State == STATE_2)
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{
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MPI_Status status;
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int flag;
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MPI_Test(&this->StateReq, &flag, &status);
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if (flag == 1)
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{
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if (this->AllDirty == 0) //done
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this->State = DONE;
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else
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this->State = STATE_0; //reset.
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}
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}
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#else
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|
if (!haveLocalWork)
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this->State = DONE;
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#endif
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|
}
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private:
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enum AdvectAlgorithmTerminatorState
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|
{
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STATE_0,
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STATE_1,
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|
STATE_2,
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|
DONE
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|
};
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|
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AdvectAlgorithmTerminatorState State = AdvectAlgorithmTerminatorState::STATE_0;
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#ifdef VTKM_ENABLE_MPI
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std::atomic<int> Dirty;
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int AllDirty = 0;
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MPI_Request StateReq;
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MPI_Comm MPIComm;
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#endif
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|
};
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template <typename DSIType>
|
template <typename DSIType>
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class AdvectAlgorithm
|
class AdvectAlgorithm
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{
|
{
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@ -39,6 +124,7 @@ public:
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, NumRanks(this->Comm.size())
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, NumRanks(this->Comm.size())
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, Rank(this->Comm.rank())
|
, Rank(this->Comm.rank())
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, UseAsynchronousCommunication(useAsyncComm)
|
, UseAsynchronousCommunication(useAsyncComm)
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|
, Terminator(this->Comm)
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{
|
{
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}
|
}
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|
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@ -97,27 +183,21 @@ public:
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vtkm::filter::flow::internal::ParticleMessenger<ParticleType> messenger(
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vtkm::filter::flow::internal::ParticleMessenger<ParticleType> messenger(
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this->Comm, this->UseAsynchronousCommunication, this->BoundsMap, 1, 128);
|
this->Comm, this->UseAsynchronousCommunication, this->BoundsMap, 1, 128);
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|
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this->ComputeTotalNumParticles();
|
while (!this->Terminator.Done())
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|
|
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while (this->TotalNumTerminatedParticles < this->TotalNumParticles)
|
|
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{
|
{
|
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std::vector<ParticleType> v;
|
std::vector<ParticleType> v;
|
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vtkm::Id numTerm = 0, blockId = -1;
|
vtkm::Id blockId = -1;
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if (this->GetActiveParticles(v, blockId))
|
if (this->GetActiveParticles(v, blockId))
|
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{
|
{
|
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//make this a pointer to avoid the copy?
|
//make this a pointer to avoid the copy?
|
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auto& block = this->GetDataSet(blockId);
|
auto& block = this->GetDataSet(blockId);
|
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DSIHelperInfo<ParticleType> bb(v, this->BoundsMap, this->ParticleBlockIDsMap);
|
DSIHelperInfo<ParticleType> bb(v, this->BoundsMap, this->ParticleBlockIDsMap);
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block.Advect(bb, this->StepSize);
|
block.Advect(bb, this->StepSize);
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numTerm = this->UpdateResult(bb);
|
this->UpdateResult(bb);
|
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}
|
}
|
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|
|
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vtkm::Id numTermMessages = 0;
|
this->Communicate(messenger);
|
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this->Communicate(messenger, numTerm, numTermMessages);
|
this->Terminator.Control(!this->Active.empty());
|
||||||
|
|
||||||
this->TotalNumTerminatedParticles += (numTerm + numTermMessages);
|
|
||||||
if (this->TotalNumTerminatedParticles > this->TotalNumParticles)
|
|
||||||
throw vtkm::cont::ErrorFilterExecution("Particle count error");
|
|
||||||
}
|
}
|
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}
|
}
|
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|
|
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@ -128,19 +208,6 @@ public:
|
|||||||
this->ParticleBlockIDsMap.clear();
|
this->ParticleBlockIDsMap.clear();
|
||||||
}
|
}
|
||||||
|
|
||||||
void ComputeTotalNumParticles()
|
|
||||||
{
|
|
||||||
vtkm::Id numLocal = static_cast<vtkm::Id>(this->Inactive.size());
|
|
||||||
for (const auto& it : this->Active)
|
|
||||||
numLocal += it.second.size();
|
|
||||||
|
|
||||||
#ifdef VTKM_ENABLE_MPI
|
|
||||||
vtkmdiy::mpi::all_reduce(this->Comm, numLocal, this->TotalNumParticles, std::plus<vtkm::Id>{});
|
|
||||||
#else
|
|
||||||
this->TotalNumParticles = numLocal;
|
|
||||||
#endif
|
|
||||||
}
|
|
||||||
|
|
||||||
DataSetIntegrator<DSIType, ParticleType>& GetDataSet(vtkm::Id id)
|
DataSetIntegrator<DSIType, ParticleType>& GetDataSet(vtkm::Id id)
|
||||||
{
|
{
|
||||||
for (auto& it : this->Blocks)
|
for (auto& it : this->Blocks)
|
||||||
@ -213,9 +280,7 @@ public:
|
|||||||
return !particles.empty();
|
return !particles.empty();
|
||||||
}
|
}
|
||||||
|
|
||||||
void Communicate(vtkm::filter::flow::internal::ParticleMessenger<ParticleType>& messenger,
|
void Communicate(vtkm::filter::flow::internal::ParticleMessenger<ParticleType>& messenger)
|
||||||
vtkm::Id numLocalTerminations,
|
|
||||||
vtkm::Id& numTermMessages)
|
|
||||||
{
|
{
|
||||||
std::vector<ParticleType> outgoing;
|
std::vector<ParticleType> outgoing;
|
||||||
std::vector<vtkm::Id> outgoingRanks;
|
std::vector<vtkm::Id> outgoingRanks;
|
||||||
@ -224,16 +289,17 @@ public:
|
|||||||
|
|
||||||
std::vector<ParticleType> incoming;
|
std::vector<ParticleType> incoming;
|
||||||
std::unordered_map<vtkm::Id, std::vector<vtkm::Id>> incomingBlockIDs;
|
std::unordered_map<vtkm::Id, std::vector<vtkm::Id>> incomingBlockIDs;
|
||||||
numTermMessages = 0;
|
|
||||||
bool block = false;
|
bool block = false;
|
||||||
#ifdef VTKM_ENABLE_MPI
|
#ifdef VTKM_ENABLE_MPI
|
||||||
block = this->GetBlockAndWait(messenger.UsingSyncCommunication(), numLocalTerminations);
|
block = this->GetBlockAndWait(messenger.UsingSyncCommunication());
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
|
vtkm::Id numTermMessages;
|
||||||
messenger.Exchange(outgoing,
|
messenger.Exchange(outgoing,
|
||||||
outgoingRanks,
|
outgoingRanks,
|
||||||
this->ParticleBlockIDsMap,
|
this->ParticleBlockIDsMap,
|
||||||
numLocalTerminations,
|
0,
|
||||||
incoming,
|
incoming,
|
||||||
incomingBlockIDs,
|
incomingBlockIDs,
|
||||||
numTermMessages,
|
numTermMessages,
|
||||||
@ -311,6 +377,10 @@ public:
|
|||||||
{
|
{
|
||||||
VTKM_ASSERT(particles.size() == idsMap.size());
|
VTKM_ASSERT(particles.size() == idsMap.size());
|
||||||
|
|
||||||
|
if (!particles.empty())
|
||||||
|
{
|
||||||
|
this->Terminator.AddWork();
|
||||||
|
|
||||||
for (auto pit = particles.begin(); pit != particles.end(); pit++)
|
for (auto pit = particles.begin(); pit != particles.end(); pit++)
|
||||||
{
|
{
|
||||||
vtkm::Id particleID = pit->GetID();
|
vtkm::Id particleID = pit->GetID();
|
||||||
@ -323,6 +393,7 @@ public:
|
|||||||
for (const auto& it : idsMap)
|
for (const auto& it : idsMap)
|
||||||
this->ParticleBlockIDsMap[it.first] = it.second;
|
this->ParticleBlockIDsMap[it.first] = it.second;
|
||||||
}
|
}
|
||||||
|
}
|
||||||
|
|
||||||
virtual void UpdateInactive(const std::vector<ParticleType>& particles,
|
virtual void UpdateInactive(const std::vector<ParticleType>& particles,
|
||||||
const std::unordered_map<vtkm::Id, std::vector<vtkm::Id>>& idsMap)
|
const std::unordered_map<vtkm::Id, std::vector<vtkm::Id>>& idsMap)
|
||||||
@ -351,7 +422,7 @@ public:
|
|||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
virtual bool GetBlockAndWait(const bool& syncComm, const vtkm::Id& numLocalTerm)
|
virtual bool GetBlockAndWait(const bool& syncComm)
|
||||||
{
|
{
|
||||||
bool haveNoWork = this->Active.empty() && this->Inactive.empty();
|
bool haveNoWork = this->Active.empty() && this->Inactive.empty();
|
||||||
|
|
||||||
@ -367,9 +438,11 @@ public:
|
|||||||
//2. numLocalTerm + this->TotalNumberOfTerminatedParticles == this->TotalNumberOfParticles
|
//2. numLocalTerm + this->TotalNumberOfTerminatedParticles == this->TotalNumberOfParticles
|
||||||
//So, if neither are true, we can safely block and wait for communication to come in.
|
//So, if neither are true, we can safely block and wait for communication to come in.
|
||||||
|
|
||||||
if (haveNoWork &&
|
// if (this->Terminator.State == AdvectAlgorithmTerminator::AdvectAlgorithmTerminatorState::STATE_2)
|
||||||
(numLocalTerm + this->TotalNumTerminatedParticles < this->TotalNumParticles))
|
// return true;
|
||||||
return true;
|
|
||||||
|
// if (haveNoWork && (numLocalTerm + this->TotalNumTerminatedParticles < this->TotalNumParticles))
|
||||||
|
// return true;
|
||||||
|
|
||||||
return false;
|
return false;
|
||||||
}
|
}
|
||||||
@ -388,9 +461,8 @@ public:
|
|||||||
std::unordered_map<vtkm::Id, std::vector<vtkm::Id>> ParticleBlockIDsMap;
|
std::unordered_map<vtkm::Id, std::vector<vtkm::Id>> ParticleBlockIDsMap;
|
||||||
vtkm::Id Rank;
|
vtkm::Id Rank;
|
||||||
vtkm::FloatDefault StepSize;
|
vtkm::FloatDefault StepSize;
|
||||||
vtkm::Id TotalNumParticles = 0;
|
|
||||||
vtkm::Id TotalNumTerminatedParticles = 0;
|
|
||||||
bool UseAsynchronousCommunication = true;
|
bool UseAsynchronousCommunication = true;
|
||||||
|
AdvectAlgorithmTerminator Terminator;
|
||||||
};
|
};
|
||||||
|
|
||||||
}
|
}
|
||||||
|
@ -39,7 +39,6 @@ public:
|
|||||||
bool useAsyncComm)
|
bool useAsyncComm)
|
||||||
: AdvectAlgorithm<DSIType>(bm, blocks, useAsyncComm)
|
: AdvectAlgorithm<DSIType>(bm, blocks, useAsyncComm)
|
||||||
, Done(false)
|
, Done(false)
|
||||||
, WorkerActivate(false)
|
|
||||||
{
|
{
|
||||||
//For threaded algorithm, the particles go out of scope in the Work method.
|
//For threaded algorithm, the particles go out of scope in the Work method.
|
||||||
//When this happens, they are destructed by the time the Manage thread gets them.
|
//When this happens, they are destructed by the time the Manage thread gets them.
|
||||||
@ -50,8 +49,6 @@ public:
|
|||||||
|
|
||||||
void Go() override
|
void Go() override
|
||||||
{
|
{
|
||||||
this->ComputeTotalNumParticles();
|
|
||||||
|
|
||||||
std::vector<std::thread> workerThreads;
|
std::vector<std::thread> workerThreads;
|
||||||
workerThreads.emplace_back(std::thread(AdvectAlgorithmThreaded::Worker, this));
|
workerThreads.emplace_back(std::thread(AdvectAlgorithmThreaded::Worker, this));
|
||||||
this->Manage();
|
this->Manage();
|
||||||
@ -63,6 +60,13 @@ public:
|
|||||||
}
|
}
|
||||||
|
|
||||||
protected:
|
protected:
|
||||||
|
bool HaveAnyWork()
|
||||||
|
{
|
||||||
|
std::lock_guard<std::mutex> lock(this->Mutex);
|
||||||
|
//We have work if there particles in any queues or a worker is busy.
|
||||||
|
return !this->Active.empty() || !this->Inactive.empty() || this->WorkerActivate;
|
||||||
|
}
|
||||||
|
|
||||||
bool GetActiveParticles(std::vector<ParticleType>& particles, vtkm::Id& blockId) override
|
bool GetActiveParticles(std::vector<ParticleType>& particles, vtkm::Id& blockId) override
|
||||||
{
|
{
|
||||||
std::lock_guard<std::mutex> lock(this->Mutex);
|
std::lock_guard<std::mutex> lock(this->Mutex);
|
||||||
@ -144,38 +148,31 @@ protected:
|
|||||||
vtkm::filter::flow::internal::ParticleMessenger<ParticleType> messenger(
|
vtkm::filter::flow::internal::ParticleMessenger<ParticleType> messenger(
|
||||||
this->Comm, useAsync, this->BoundsMap, 1, 128);
|
this->Comm, useAsync, this->BoundsMap, 1, 128);
|
||||||
|
|
||||||
while (this->TotalNumTerminatedParticles < this->TotalNumParticles)
|
while (!this->Terminator.Done())
|
||||||
{
|
{
|
||||||
std::unordered_map<vtkm::Id, std::vector<DSIHelperInfo<ParticleType>>> workerResults;
|
std::unordered_map<vtkm::Id, std::vector<DSIHelperInfo<ParticleType>>> workerResults;
|
||||||
this->GetWorkerResults(workerResults);
|
this->GetWorkerResults(workerResults);
|
||||||
|
|
||||||
vtkm::Id numTerm = 0;
|
|
||||||
for (auto& it : workerResults)
|
for (auto& it : workerResults)
|
||||||
{
|
|
||||||
for (auto& r : it.second)
|
for (auto& r : it.second)
|
||||||
numTerm += this->UpdateResult(r);
|
this->UpdateResult(r);
|
||||||
}
|
|
||||||
|
|
||||||
vtkm::Id numTermMessages = 0;
|
this->Communicate(messenger);
|
||||||
this->Communicate(messenger, numTerm, numTermMessages);
|
this->Terminator.Control(this->HaveAnyWork());
|
||||||
|
|
||||||
this->TotalNumTerminatedParticles += (numTerm + numTermMessages);
|
|
||||||
if (this->TotalNumTerminatedParticles > this->TotalNumParticles)
|
|
||||||
throw vtkm::cont::ErrorFilterExecution("Particle count error");
|
|
||||||
}
|
}
|
||||||
|
|
||||||
//Let the workers know that we are done.
|
//Let the workers know that we are done.
|
||||||
this->SetDone();
|
this->SetDone();
|
||||||
}
|
}
|
||||||
|
|
||||||
bool GetBlockAndWait(const bool& syncComm, const vtkm::Id& numLocalTerm) override
|
bool GetBlockAndWait(const bool& syncComm) override
|
||||||
{
|
{
|
||||||
std::lock_guard<std::mutex> lock(this->Mutex);
|
std::lock_guard<std::mutex> lock(this->Mutex);
|
||||||
if (this->Done)
|
if (this->Done)
|
||||||
return true;
|
return true;
|
||||||
|
|
||||||
return (this->AdvectAlgorithm<DSIType>::GetBlockAndWait(syncComm, numLocalTerm) &&
|
return (this->AdvectAlgorithm<DSIType>::GetBlockAndWait(syncComm) && !this->WorkerActivate &&
|
||||||
!this->WorkerActivate && this->WorkerResults.empty());
|
this->WorkerResults.empty());
|
||||||
}
|
}
|
||||||
|
|
||||||
void GetWorkerResults(
|
void GetWorkerResults(
|
||||||
@ -193,7 +190,7 @@ protected:
|
|||||||
|
|
||||||
std::atomic<bool> Done;
|
std::atomic<bool> Done;
|
||||||
std::mutex Mutex;
|
std::mutex Mutex;
|
||||||
bool WorkerActivate;
|
bool WorkerActivate = false;
|
||||||
std::condition_variable WorkerActivateCondition;
|
std::condition_variable WorkerActivateCondition;
|
||||||
std::unordered_map<vtkm::Id, std::vector<DSIHelperInfo<ParticleType>>> WorkerResults;
|
std::unordered_map<vtkm::Id, std::vector<DSIHelperInfo<ParticleType>>> WorkerResults;
|
||||||
};
|
};
|
||||||
|
Loading…
Reference in New Issue
Block a user