Commit Graph

202 Commits

Author SHA1 Message Date
Sujin Philip
34bae5690d Add Probe worklet and filter 2018-01-30 10:43:18 -05:00
Li-Ta Lo
8622a2423c Merge topic 'connected_component'
bdb9c37e update based on issues pointed out by Robert
a713a0d8 Generalize and documentation for DeviceAdapterAlgorithm::Transform
29232c49 Revert un-intended change to examples
7ef956a9 Merge branch 'master' into connected_component
a9ed1ecf add CMakeLists.txt for header files
ba3cba64 update copyright statements
aa96874e Merge branch 'connected_component' of gitlab.kitware.com:ollielo/vtk-m into connected_component
2f07119e Merge branch 'master' into connected_component
...

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1044
2018-01-17 15:31:10 -05:00
Robert Maynard
0660c67fef Merge branch 'master' into vtk-m-cmake_refactor 2018-01-16 15:42:28 -05:00
Robert Maynard
067dad41df Add ScalarsToColors worklet(s)
The ScalarsToColors is the first step in reproducing the color
capability that exists in VTK. The next step after this is to
provide a comparable lookup table.
2018-01-16 13:03:41 -05:00
Robert Maynard
004bfe7b12 Prefer using existence of targets when looking for TBB/CUDA support 2018-01-08 14:00:57 -05:00
Robert Maynard
b2c03ad858 Unit_tests are built with the correct compiler when cuda is enabled.
Previously all the Unit_tests that shared source files would use cuda
once CUDA set the language on the file.
2018-01-08 14:00:57 -05:00
Li-Ta Lo
2a9439ab1e Merge branch 'master' into connected_component 2018-01-02 17:59:19 -07:00
Li-Ta Lo
4c2ef4f89b factor out CellSetConnectivity worklet, cleanup 2018-01-02 16:44:35 -07:00
Robert Maynard
24e57556e6 Merge branch 'master' into vtk-m-cmake_refactor
Includes updating to cleanup benchmark code and handle the new MPI option
2017-12-28 14:23:21 -05:00
Dave Pugmire
2537a1cf56 Worklets for cross and dot product. 2017-12-22 15:20:20 -05:00
Li-Ta Lo
2e88f4220a Connected component for triangle mesh 2017-12-22 10:31:02 -07:00
Dave Pugmire
c6a4e335d9 Normalize worklet (both in place, and copy). 2017-12-19 11:44:30 -05:00
Manish Mathai
a8c811779a Add timers 2017-11-21 12:02:02 -08:00
Manish Mathai
7c7d37134c Implementation of boundary interval hierarchy 2017-11-14 17:11:38 -08:00
Robert Maynard
56c7362258 A thought on what CMake 3.9 would mean to VTK-m. 2017-10-27 15:29:51 -04:00
Kenneth Moreland
c3a3184d51 Update copyright for Sandia
Sandia National Laboratories recently changed management from the
Sandia Corporation to the National Technology & Engineering Solutions
of Sandia, LLC (NTESS). The copyright statements need to be updated
accordingly.
2017-09-20 15:33:44 -06:00
Li-Ta Lo
1eaaf342ef Merge branch 'master' into kdtree_docs 2017-09-18 13:19:55 -06:00
Li-Ta Lo
1d4b43b540 Add documentation
Add doxygen documentations for public interface of KD-Tree construction and search.
Also fixed several const-correctness issues.
2017-09-18 13:16:37 -06:00
Li-Ta Lo
de5f9d1c97 Merge topic 'NDHistogram'
bc1096d8 Update new interface to NDHistogram, NDEntropy worklet and filter
317cff0d Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into NDHistogram
fd30187d Add 'N-dimensional histogram, histogram marginalization and entropy calculation worklets and filters'

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !847
2017-09-14 10:42:30 -04:00
Patricia Kroll Fasel - 090207
f3766449f2 Cosmology halo finder
Running friend of friends algorithm and then NxN most bound particle
after to find halo center. Cosmology center finder running NxN MBP
algorithm followed by a estimator reducing the problem to MxN MBP
to speed up run.
2017-09-06 11:43:40 -06:00
caseywang777
317cff0dd8 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into NDHistogram 2017-09-02 19:13:04 -04:00
caseywang777
fd30187d53 Add 'N-dimensional histogram, histogram marginalization and entropy calculation worklets and filters' 2017-09-02 18:35:21 -04:00
Kenneth Moreland
3471dc27fe Expand usage of AverageByKey
The AverageByKey.h header file had a single function that used the
device adapter algorithm ReduceByKey method to do a simple averaging of
a field. I added a second method that can do an average when given a
vtkm::worklet::Keys object. I expect this to be a common use case as we
implement transforming fields from input to output in many algorithms.
2017-08-24 17:20:21 -06:00
Robert Maynard
ce80383238 Adds WorkletPointNeighborhood and DispatcherPointNeighborhood types.
VTK-m is now able to run algorithms on structured points that require the
local point neighbors in a highly efficient manner.
2017-08-23 16:42:00 -04:00
Kenneth Moreland
03b6f62d05 Add a test for the WholeCellSetIn argument
All types of cell sets should have a consistent interface. This is
tested (and fixed) for explicit and permutation cell sets. However, an
unfixed bug that has been identified is that permutation cell sets only
work for point to cell topologies. All others are not supported
correctly.
2017-07-28 13:46:37 -06:00
Abhishek
58a08287bb Merge topic 'PICS'
8e500a17 Moving PortalType templetization to Step method of Integrators
33150365 Validate the data format for the UniformGridEvaluate.
69c1f946 Merge branch 'PICS' of gitlab.kitware.com:dpugmire/vtk-m into PICS
b87e8881 Merge branch 'PICS' of gitlab.kitware.com:dpugmire/vtk-m into PICS
5a652f41 Fix for MSVC compile isses
50dbd634 Remove unneeded template from grid eval glasses.
6f1e9b40 Fix compile warning.
32a0be8b Fix compile warnings/errors from CDash.
...

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !828
2017-07-13 09:41:33 -04:00
Dave Pugmire
4574f36dec Cleanup of particle advection worklets
Created ParticleAdvection.h for worklets that match the worklet pattern.
Slight reorganization of existing code to match this pattern.
Added a unittest particle advection.
2017-07-11 21:22:28 -05:00
Li-Ta Lo
5bf0bfe11a Merge topic 'kdtree'
37ded1cf Resolve code review issues, 1. cudaDeviceSetLimit issue, 2. Namespace issue
bf11195d Resolve the code review issues
75c794f6 Add 3D kd tree reconstruction and nearest neighbor searh

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !797
2017-07-11 11:40:39 -04:00
Sujin Philip
42ce2dcb39 Add ScatterPermutation 2017-06-20 13:41:02 -04:00
caseywang777
75c794f6c0 Add 3D kd tree reconstruction and nearest neighbor searh 2017-06-15 17:55:30 -06:00
Sujin Philip
749c0c8920 Add Worklet and Filter for faceted surface normals 2017-06-08 09:37:12 -04:00
Patricia Kroll Fasel - 090207
6256324195 Start of ExtractStructured worklet which only gathers geometry 2017-04-04 14:00:04 -06:00
Patricia Kroll Fasel - 090207
9f06a1ea37 Merge branch 'master' into extract-subset 2017-03-27 08:58:17 -06:00
Patricia Kroll Fasel - 090207
984af5a2b4 Reorganize Triangulate and Tetrahedralize and write filters. 2017-03-23 11:58:00 -06:00
Patricia Kroll Fasel - 090207
9f0c99920c Add filters and tests for ExtractPoints and ExtractGeometry, by id only. 2017-03-21 15:14:35 -06:00
Patricia Kroll Fasel - 090207
9583e627dc Add ExtractCells by Id and by ImplicitFunction 2017-03-16 13:44:01 -06:00
Patricia Kroll Fasel - 090207
8598711c09 ExtractPoints worklet for ImplicitFunction
Add Box to ImplicitFunction
2017-03-14 12:14:50 -06:00
Patricia Kroll Fasel - 090207
fa0b9bee73 MaskPoints worklet and filter added 2017-03-08 16:04:12 -07:00
Patricia Kroll Fasel - 090207
dee28a3089 ThresholdPoints first attempt 2017-03-07 14:03:22 -07:00
Thomas J. Otahal
5777c4caa5 Merge branch 'master' into vector_magnitude_field_filter
Conflicts:
	vtkm/worklet/testing/CMakeLists.txt
2017-01-24 09:55:31 -07:00
Kenneth Moreland
28b866920f Merge branch 'reduce-by-key-worklet' into 'master'
Reduce by Key Worklet Type

See merge request !645
2017-01-19 16:25:06 -05:00
Thomas J. Otahal
556b922733 Created a filter for the vector magnitude worklet.
Modified the vector magnitude worklet to accept VecAll instead
of Vec3 and return Scalar. Modified the Magnitude() and Sqrt() functions
to return FloatDefault for all inputs except for Float64.

Perhaps we should modify other functions in Math.h and VectorAnalysis.h to
return float types for intergral arguments instead of integral types?
2017-01-19 13:27:42 -07:00
Kenneth Moreland
58eb8f168d Add WorkletReduceByKey and dispatcher
And the basic type for a reduce by key worklet and its associated
adapter. Right now the worklet only supports passing in keys. Values
come next.
2017-01-17 15:53:06 -07:00
Kenneth Moreland
cd64b69a55 Add Keys class
This class will manage the keys during a reduce-by-key worklet
execution.
2017-01-17 15:53:04 -07:00
Patricia Kroll Fasel - 090207
9412584bf2 First implementation of contour tree 2D and 3D, serial and cuda. 2017-01-09 13:54:47 -07:00
Robert Maynard
134f24496b Add a point gradient worklet. 2016-12-12 13:26:16 -05:00
Kenneth Moreland
ce338d1484 Add a worklet for copying cell sets 2016-11-22 17:15:10 -07:00
Kenneth Moreland
b175468082 Add RemoveUnusedPoints class
RemoveUnusedPoints contains a couple of worklets and some helper methods
to compact the points in a CellSetExplicit. This is helpful when you
have an operation that creates new cells but might not use all the
original points of the inputs.
2016-11-22 17:11:52 -07:00
Robert Maynard
7a52fa3940 Add in Cell Gradient for scalar fields. 2016-11-14 12:52:00 -05:00
Christopher Sewell
93d7956daf Attempt 13 to resolve Windows compiler warning with streaming storage 2016-10-21 16:08:13 -06:00
Christopher Sewell
278db37c08 Attempt 2 to resolve Windows compiler warning with streaming storage 2016-10-19 14:44:48 -06:00
Christopher Sewell
d92f39df12 Merge branch 'master' into StreamingArray 2016-09-15 17:54:59 -06:00
Samuel Li
c72b135608 Uncomment other build objects 2016-08-08 12:21:08 -04:00
Samuel Li
3d29e504cc fixed a memory bug, now I believe it's ready for merge 2016-08-06 00:08:29 -07:00
Christopher Sewell
c4ab06f7cb Resoring other worklet tests 2016-08-03 20:23:40 -06:00
Christopher Sewell
2caf81a4af First commit for ArrayHandleStreaming 2016-08-02 16:54:12 -06:00
Samuel Li
dd1ef8e47d include all objects in the cmake file 2016-07-29 13:19:28 -07:00
Samuel Li
7dc59d80d7 trying to figure out how to use deviceAdapterAlgorithms 2016-07-27 16:23:26 -07:00
Samuel Li
b2d15bbbde move wavelet stuff back to worklet folder 2016-07-27 14:28:38 -06:00
Samuel Li
6d81f261d5 Re-organize files, adding functions to filters. The worklet of WaveletTransform passes tests. 2016-07-18 09:23:20 -06:00
Samuel Li
7879f32806 add files for testing Wavelets 2016-07-05 10:24:29 -06:00
Kenneth Moreland
9ccd7fa9c7 Change Regular to Uniform
There was an inconsistency in naming classes where axes-aligned grids
with even spacing were sometimes called "uniform" and sometimes called
"regular". Maintain consistency by always calling them uniform.
2016-01-19 15:54:05 -07:00
Kenneth Moreland
2ac8456b5e Add WholeArray* ControlSignature tags
The WholeArrayIn, WholeArrayInOut, and WholeArrayOut ControlSignature
tags behave similarly to using an ExecObject tag with an
ExecutionWholeArray or ExecutionWholeArrayConst object. However, the
WholeArray* tags can simplify some implementations in two ways. First,
it allows you to specify more precisely what data is passed in. You have
to pass in an ArrayHandle or else an error will occur (as opposed to be
able to pass in any type of execution object). Second, this allows you
to easily pass in arrays stored in DynamicArrayHandle objects. The
Invoke mechanism will automatically find the appropriate static class.
This cannot be done easily with ExecutionWholeArray.
2015-12-07 09:52:29 -07:00
T.J. Corona
baa73eaad8 Merge topic 'marching-cubes'
33b0d1bf Move marching cubes edge table out of the worklet.
a5ae4127 Remove IsosurfaceUniformGrid.
35355382 Generalize IsosurfaceUniformGrid to Accept explicit cell sets.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !272
2015-12-03 14:54:02 -05:00
T.J. Corona
a5ae4127e0 Remove IsosurfaceUniformGrid. 2015-12-02 15:11:56 -05:00
T.J. Corona
353553829d Generalize IsosurfaceUniformGrid to Accept explicit cell sets. 2015-11-20 12:38:03 -05:00
Patricia Kroll Fasel - 090207
e34aaa02ea Merge branch 'master' of gitlab.kitware.com:Fasel/vtk-m into streamline 2015-11-12 16:08:44 -07:00
Kenneth Moreland
e6a9c96c96 Adding ScatterCounting 2015-11-06 18:05:20 -07:00
Patricia Kroll Fasel - 090207
123322f4b9 First code for stream lines worklet 2015-11-05 16:08:54 -07:00
Patricia
58178a3e00 Merge topic 'stat_histogram'
d3d63a0a Merge branch 'master' of gitlab.kitware.com:Fasel/vtk-m into stat_histogram
4aa57d5c Merge branch 'master' of gitlab.kitware.com:Fasel/vtk-m into stat_histogram
49940a4c Attempt to fix compiler errors and warnings.
0e0f5d2e Fix compiler warnings.
a6487b3c Merge branch 'master' of gitlab.kitware.com:Fasel/vtk-m into stat_histogram
c2a9f184 Fix syntax of ArrayHandleCounting usage
6dd8bde6 Merge branch 'master' into stat_histogram

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !190
2015-10-14 15:56:24 -04:00
Patricia Kroll Fasel - 090207
d3d63a0a20 Merge branch 'master' of gitlab.kitware.com:Fasel/vtk-m into stat_histogram 2015-10-14 11:51:31 -06:00
Sujin Philip
e4a8ae82ed Add Threshold worklet and unit tests. 2015-10-12 14:37:59 -04:00
Patricia Kroll Fasel - 090207
65c9de08bd Merge branch 'master' of gitlab.kitware.com:Fasel/vtk-m into tetra_explicit 2015-10-08 16:07:18 -06:00
Patricia Kroll Fasel - 090207
4e92cd3f33 Tetrahedralize 2D explicit dataset first version with opengl example 2015-09-23 14:43:27 -06:00
Patricia Kroll Fasel - 090207
c2a9f184cf Fix syntax of ArrayHandleCounting usage 2015-09-21 11:55:10 -06:00
Patricia Kroll Fasel - 090207
d57393d142 Fix merge problems with CMakeList files 2015-09-17 13:49:47 -06:00
Patricia Kroll Fasel - 090207
02d2eefe22 3d uniform grid to tetrahedra now includes getting actual vertex points. 2015-09-17 13:10:22 -06:00
Patricia Kroll Fasel - 090207
22c95f102a Update tetrahedralize to output dataset 2015-09-14 14:45:59 -06:00
John Biddiscombe
fe284ffbfb Add unit test for splat kernel integral.
The test computes the integral using simpsons rule and checks
that the value is unity (+/- epsilon)
2015-09-14 21:39:43 +02:00
Christopher Meyer Sewell - 188584
f7b031f1fb First version of uniform grid isosurface using new data model and topology worklet 2015-08-28 16:12:21 -04:00
Robert Maynard
55a11c4551 Merge branch 'master' into add-external-faces
Conflicts:
	vtkm/worklet/CMakeLists.txt
	vtkm/worklet/testing/CMakeLists.txt
2015-08-27 16:40:36 -04:00
Sujin Philip
e38152206a Clip worklets 2015-08-26 15:21:25 -04:00
Brent Lessley
b5ed990d85 Removed compilation errors related to ArrayHandleImplicit. 2015-08-08 12:33:15 -07:00
Brent Lessley
49eb758532 Resolved all but one of the issues from merge request #78. Currently, there is a compilation error related to new code for sorting based on face vertices, instead of hash key values. 2015-08-06 14:31:35 -07:00
Brent Lessley
365a0a2382 A working implementation of the External Faces algorithm, along with a unit test to verify correctness on a simple dataset. 2015-08-06 14:31:35 -07:00
Robert Maynard
69eb4bb46b Correct issues compiling on OSX 10.8 with CUDA 6.5
Removed the MultiParam test as we have PointElevation which does the exact
same thing.
2015-07-16 14:38:56 -04:00
Robert Maynard
99df565f85 Merge branch 'vtkm_exec_array_in' into 'master'
Implement a way to pass a portal to worklet as a parameter.

This is built ontop of the ExecutionObjectBase work, and is designed to show
other developers how they can create custom objects that are shared among
all worklets, but are passed as parameters to the worklet.

See merge request !60
2015-06-29 15:06:41 -04:00
Robert Maynard
40a2ce0645 Merge branch 'MeshSimplifyWorklets' into 'master'
Mesh simplify worklets

Vertex clustering algorithm and a AverageByKey computation are now in vtkm::worklets

See merge request !57
2015-06-29 09:49:19 -04:00
Robert Maynard
d7e85bb6ae Implement a way to pass a portal to worklet as a parameter.
This is built ontop of the ExecutionObjectBase work, and is designed to show
other developers how they can create custom objects that are shared among
all worklets, but are passed as parameters to the worklet.
2015-06-26 16:26:51 -04:00
Robert Maynard
5fa6afed2e Cleanup the worklet UnitTests. Mainly move everything into namespaces. 2015-06-26 15:52:59 -04:00
Chun-Ming Chen
ebd6e43409 Added VertexClustering test 2015-06-24 14:55:22 -04:00
Robert Maynard
36c2740072 Teach DispatcherMapTopology how to do 2d and 3d scheduling.
The requirements for 2d/3d scheduling are that the input domain must be a
regularly structured grid.
2015-06-22 16:05:32 -04:00
Sujin Philip
5241cab738 Add PointElevation Worklet 2015-06-09 11:28:55 -04:00
Sujin Philip
0127e4d9d7 Add cell average worklet 2015-06-05 12:48:29 -04:00
Robert Maynard
60e8166290 Add a simple example on how to handle multiple params to a worklet.
Mainly showing how to constrain the type for all parameters to be the
same, and to throw an error otherwise.
2015-06-04 13:12:52 -04:00
Robert Maynard
7f2ee8d050 Merge branch 'master' into datamodel-design 2015-06-03 14:36:53 -04:00
Sujin Philip
08f88b1cb9 Add TBB backend. 2015-06-01 13:57:37 -04:00
Robert Maynard
6b8e7822be The Copyright statement now has all the periods in the correct location. 2015-05-21 10:30:11 -04:00
Dave Pugmire
4dd186eda6 add worklet test for regular 2015-05-18 17:08:15 -04:00
Robert Maynard
269ac3a8af Add in the MapTopologyExplicit worklet test.
Currently only works on serial backend.
2015-05-12 15:42:48 -04:00
Robert Maynard
3e8ac22fe6 Allow worklet tests to be built for the cuda device adapter. 2014-12-19 13:47:28 -05:00
Kenneth Moreland
80809a8f0f Add DispatcherMapField.
This is a simple version of a dispatcher, but an important one.

Note that there is an issue brought up with UnitTestWorkletMapField in
that there needs to be better ways to specify worklet argument types.
2014-10-21 13:10:00 -06:00