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https://gitlab.kitware.com/vtk/vtk-m
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During the VTK-m 1.8 and 1.9 development, the filter infrastructure was overhauled. Part of this created a completely new set of base classes. To avoid confusion with the original filter base classes and ease transition, the new filter base classes were named `NewFilter*`. Eventually after all filters were transitioned, the old filter base classes were deprecated. With the release of VTK-m 2.0, the old filter base classes are removed. The "new" filter base classes are no longer new. Thus, they have been renamed simply `Filter` (and `FilterField`).
208 lines
6.6 KiB
C++
208 lines
6.6 KiB
C++
//============================================================================
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// Copyright (c) Kitware, Inc.
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// All rights reserved.
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// See LICENSE.txt for details.
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//
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// This software is distributed WITHOUT ANY WARRANTY; without even
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// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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// PURPOSE. See the above copyright notice for more information.
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//============================================================================
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#include "HistogramMPI.h"
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#include <vtkm/filter/density_estimate/worklet/FieldHistogram.h>
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#include <vtkm/cont/Algorithm.h>
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#include <vtkm/cont/ArrayPortalToIterators.h>
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#include <vtkm/cont/AssignerPartitionedDataSet.h>
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#include <vtkm/cont/EnvironmentTracker.h>
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#include <vtkm/cont/ErrorFilterExecution.h>
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#include <vtkm/cont/FieldRangeGlobalCompute.h>
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#include <vtkm/thirdparty/diy/diy.h>
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#include <vtkm/thirdparty/diy/mpi-cast.h>
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#include <mpi.h>
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namespace example
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{
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namespace detail
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{
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class DistributedHistogram
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{
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std::vector<vtkm::cont::ArrayHandle<vtkm::Id>> LocalBlocks;
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public:
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DistributedHistogram(vtkm::Id numLocalBlocks)
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: LocalBlocks(static_cast<size_t>(numLocalBlocks))
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{
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}
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void SetLocalHistogram(vtkm::Id index, const vtkm::cont::ArrayHandle<vtkm::Id>& bins)
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{
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this->LocalBlocks[static_cast<size_t>(index)] = bins;
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}
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void SetLocalHistogram(vtkm::Id index, const vtkm::cont::Field& field)
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{
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this->SetLocalHistogram(index,
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field.GetData().AsArrayHandle<vtkm::cont::ArrayHandle<vtkm::Id>>());
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}
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vtkm::cont::ArrayHandle<vtkm::Id> ReduceAll(const vtkm::Id numBins) const
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{
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const vtkm::Id numLocalBlocks = static_cast<vtkm::Id>(this->LocalBlocks.size());
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auto comm = vtkm::cont::EnvironmentTracker::GetCommunicator();
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if (comm.size() == 1 && numLocalBlocks <= 1)
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{
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// no reduction necessary.
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return numLocalBlocks == 0 ? vtkm::cont::ArrayHandle<vtkm::Id>() : this->LocalBlocks[0];
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}
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// reduce local bins first.
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vtkm::cont::ArrayHandle<vtkm::Id> local;
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local.Allocate(numBins);
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std::fill(vtkm::cont::ArrayPortalToIteratorBegin(local.WritePortal()),
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vtkm::cont::ArrayPortalToIteratorEnd(local.WritePortal()),
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static_cast<vtkm::Id>(0));
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for (const auto& lbins : this->LocalBlocks)
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{
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vtkm::cont::Algorithm::Transform(local, lbins, local, vtkm::Add());
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}
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// now reduce across ranks using MPI.
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// converting to std::vector
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std::vector<vtkm::Id> send_buf(static_cast<std::size_t>(numBins));
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std::copy(vtkm::cont::ArrayPortalToIteratorBegin(local.ReadPortal()),
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vtkm::cont::ArrayPortalToIteratorEnd(local.ReadPortal()),
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send_buf.begin());
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std::vector<vtkm::Id> recv_buf(static_cast<std::size_t>(numBins));
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MPI_Reduce(&send_buf[0],
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&recv_buf[0],
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static_cast<int>(numBins),
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sizeof(vtkm::Id) == 4 ? MPI_INT : MPI_LONG,
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MPI_SUM,
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0,
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vtkmdiy::mpi::mpi_cast(comm.handle()));
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if (comm.rank() == 0)
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{
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local.Allocate(numBins);
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std::copy(recv_buf.begin(),
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recv_buf.end(),
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vtkm::cont::ArrayPortalToIteratorBegin(local.WritePortal()));
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return local;
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}
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return vtkm::cont::ArrayHandle<vtkm::Id>();
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}
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};
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} // namespace detail
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//-----------------------------------------------------------------------------
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VTKM_CONT vtkm::cont::DataSet HistogramMPI::DoExecute(const vtkm::cont::DataSet& input)
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{
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const auto& fieldArray = this->GetFieldFromDataSet(input).GetData();
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if (!this->InExecutePartitions)
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{
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// Handle initialization that would be done in PreExecute if the data set had partitions.
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if (this->Range.IsNonEmpty())
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{
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this->ComputedRange = this->Range;
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}
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else
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{
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auto handle = vtkm::cont::FieldRangeGlobalCompute(
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input, this->GetActiveFieldName(), this->GetActiveFieldAssociation());
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if (handle.GetNumberOfValues() != 1)
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{
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throw vtkm::cont::ErrorFilterExecution("expecting scalar field.");
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}
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this->ComputedRange = handle.ReadPortal().Get(0);
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}
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}
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vtkm::cont::ArrayHandle<vtkm::Id> binArray;
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auto resolveType = [&](const auto& concrete) {
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using T = typename std::decay_t<decltype(concrete)>::ValueType;
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T delta;
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vtkm::worklet::FieldHistogram worklet;
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worklet.Run(concrete,
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this->NumberOfBins,
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static_cast<T>(this->ComputedRange.Min),
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static_cast<T>(this->ComputedRange.Max),
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delta,
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binArray);
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this->BinDelta = static_cast<vtkm::Float64>(delta);
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};
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fieldArray
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.CastAndCallForTypesWithFloatFallback<vtkm::TypeListFieldScalar, VTKM_DEFAULT_STORAGE_LIST>(
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resolveType);
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vtkm::cont::DataSet output;
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output.AddField(
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{ this->GetOutputFieldName(), vtkm::cont::Field::Association::WholeDataSet, binArray });
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// The output is a "summary" of the input, no need to map fields
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return output;
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}
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VTKM_CONT vtkm::cont::PartitionedDataSet HistogramMPI::DoExecutePartitions(
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const vtkm::cont::PartitionedDataSet& input)
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{
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this->PreExecute(input);
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auto result = this->Filter::DoExecutePartitions(input);
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this->PostExecute(input, result);
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return result;
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}
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//-----------------------------------------------------------------------------
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inline VTKM_CONT void HistogramMPI::PreExecute(const vtkm::cont::PartitionedDataSet& input)
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{
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if (this->Range.IsNonEmpty())
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{
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this->ComputedRange = this->Range;
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}
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else
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{
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auto handle = vtkm::cont::FieldRangeGlobalCompute(
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input, this->GetActiveFieldName(), this->GetActiveFieldAssociation());
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if (handle.GetNumberOfValues() != 1)
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{
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throw vtkm::cont::ErrorFilterExecution("expecting scalar field.");
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}
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this->ComputedRange = handle.ReadPortal().Get(0);
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}
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}
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//-----------------------------------------------------------------------------
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inline VTKM_CONT void HistogramMPI::PostExecute(const vtkm::cont::PartitionedDataSet&,
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vtkm::cont::PartitionedDataSet& result)
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{
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// iterate and compute HistogramMPI for each local block.
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detail::DistributedHistogram helper(result.GetNumberOfPartitions());
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for (vtkm::Id cc = 0; cc < result.GetNumberOfPartitions(); ++cc)
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{
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auto& ablock = result.GetPartition(cc);
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helper.SetLocalHistogram(cc, ablock.GetField(this->GetOutputFieldName()));
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}
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vtkm::cont::DataSet output;
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vtkm::cont::Field rfield(this->GetOutputFieldName(),
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vtkm::cont::Field::Association::WholeDataSet,
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helper.ReduceAll(this->NumberOfBins));
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output.AddField(rfield);
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result = vtkm::cont::PartitionedDataSet(output);
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}
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} // namespace example
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