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189 lines
8.3 KiB
C++
189 lines
8.3 KiB
C++
//============================================================================
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// Copyright (c) Kitware, Inc.
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// All rights reserved.
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// See LICENSE.txt for details.
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// This software is distributed WITHOUT ANY WARRANTY; without even
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// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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// PURPOSE. See the above copyright notice for more information.
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//
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// Copyright 2014 Sandia Corporation.
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// Copyright 2014 UT-Battelle, LLC.
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// Copyright 2014 Los Alamos National Security.
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//
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// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
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// the U.S. Government retains certain rights in this software.
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//
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// Under the terms of Contract DE-AC52-06NA25396 with Los Alamos National
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// Laboratory (LANL), the U.S. Government retains certain rights in
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// this software.
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//============================================================================
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// Copyright (c) 2016, Los Alamos National Security, LLC
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// All rights reserved.
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//
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// Copyright 2016. Los Alamos National Security, LLC.
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// This software was produced under U.S. Government contract DE-AC52-06NA25396
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// for Los Alamos National Laboratory (LANL), which is operated by
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// Los Alamos National Security, LLC for the U.S. Department of Energy.
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// The U.S. Government has rights to use, reproduce, and distribute this
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// software. NEITHER THE GOVERNMENT NOR LOS ALAMOS NATIONAL SECURITY, LLC
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// MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY FOR THE
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// USE OF THIS SOFTWARE. If software is modified to produce derivative works,
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// such modified software should be clearly marked, so as not to confuse it
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// with the version available from LANL.
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//
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// Additionally, redistribution and use in source and binary forms, with or
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// without modification, are permitted provided that the following conditions
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// are met:
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//
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// 1. Redistributions of source code must retain the above copyright notice,
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// this list of conditions and the following disclaimer.
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// 2. Redistributions in binary form must reproduce the above copyright notice,
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// this list of conditions and the following disclaimer in the documentation
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// and/or other materials provided with the distribution.
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// 3. Neither the name of Los Alamos National Security, LLC, Los Alamos
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// National Laboratory, LANL, the U.S. Government, nor the names of its
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// contributors may be used to endorse or promote products derived from
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// this software without specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY LOS ALAMOS NATIONAL SECURITY, LLC AND
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// CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
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// BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
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// FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL LOS ALAMOS
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// NATIONAL SECURITY, LLC OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
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// INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
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// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
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// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
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// THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//============================================================================
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// This code is based on the algorithm presented in the paper:
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// “Parallel Peak Pruning for Scalable SMP Contour Tree Computation.”
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// Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
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// Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
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// (LDAV), October 2016, Baltimore, Maryland.
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//=======================================================================================
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//
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// COMMENTS:
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//
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// This functor identifies for each vertex which edges to keep. For arbitrary meshes,
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// this should use reductions. For regular meshes, this way is faster due to low bounded
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// updegree.
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//
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// Any vector needed by the functor for lookup purposes will be passed as a parameter to
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// the constructor and saved, with the actual function call being the operator ()
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//
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// Vectors marked I/O are intrinsically risky unless there is an algorithmic guarantee
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// that the read/writes are completely independent - which for our case actually occurs
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// The I/O vectors should therefore be justified in comments both here & in caller
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//
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//=======================================================================================
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#ifndef vtk_m_worklet_contourtree_active_edge_transferrer_h
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#define vtk_m_worklet_contourtree_active_edge_transferrer_h
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#include <vtkm/exec/ExecutionWholeArray.h>
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#include <vtkm/worklet/WorkletMapField.h>
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namespace vtkm
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{
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namespace worklet
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{
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namespace contourtree
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{
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// Worklet: set initial chain maximum value
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template <typename DeviceAdapter>
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class ActiveEdgeTransferrer : public vtkm::worklet::WorkletMapField
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{
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public:
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typedef void ControlSignature(
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FieldIn<IdType> vertexID, // (input) active vertex ID
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FieldIn<IdType> newPosition, // (input) new position of edge in array
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FieldIn<IdType> newOutdegree, // (input) the new updegree computed
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WholeArrayInOut<IdType> firstEdge, // (i/o) first edge of each active vertex
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WholeArrayInOut<IdType> outdegree, // (i/o) existing vertex updegrees
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WholeArrayInOut<IdType> chainExtremum, // (i/o) chain extremum for vertices
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WholeArrayInOut<IdType> edgeFar, // (i/o) high end of each edge
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WholeArrayOut<IdType> newActiveEdges); // (output) new active edge list
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typedef void ExecutionSignature(_1, _2, _3, _4, _5, _6, _7, _8);
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typedef _1 InputDomain;
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// Passed in constructor because of argument limit on operator
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typedef
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typename vtkm::cont::ArrayHandle<vtkm::Id>::template ExecutionTypes<DeviceAdapter>::PortalConst
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IdPortalType;
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IdPortalType activeEdges; // (input) active edges
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IdPortalType prunesTo; // (input) where a vertex prunes to
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// Constructor
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VTKM_EXEC_CONT
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ActiveEdgeTransferrer(IdPortalType ActiveEdges, IdPortalType PrunesTo)
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: activeEdges(ActiveEdges)
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, prunesTo(PrunesTo)
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{
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}
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// WARNING: POTENTIAL RISK FOR I/O
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// chainMaximum is safe for I/O here because:
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// we have previously eliminated maxima from the active vertex list
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// we lookup chainMaximum of edgeHigh, which is guaranteed to be a maximum
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// therefore, the chainMaximum entries edited are *NEVER* also accessed & v.v.
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// edgeHigh is safe to edit, because each element only accesses it's own, and
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// reads the current value before writing to it
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// the same is true of firstEdge and updegree
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template <typename InOutFieldPortalType, typename OutFieldPortalType>
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VTKM_EXEC void operator()(const vtkm::Id& vertexID,
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const vtkm::Id& newPosition,
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const vtkm::Id& newOutdegree,
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const InOutFieldPortalType& firstEdge,
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const InOutFieldPortalType& outdegree,
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const InOutFieldPortalType& chainExtremum,
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const InOutFieldPortalType& edgeFar,
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const OutFieldPortalType& newActiveEdges) const
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{
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// retrieve actual vertex ID & first edge
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vtkm::Id edgeFirst = firstEdge.Get(vertexID);
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// internal counter for # of edges
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vtkm::Id whichEdge = newPosition;
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// walk through the vertex edges, counting as we go
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for (vtkm::Id edge = 0; edge < outdegree.Get(vertexID); edge++)
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{
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// compute the index and edge ID of this edge
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vtkm::Id edgeIndex = edgeFirst + edge;
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vtkm::Id edgeID = activeEdges.Get(edgeIndex);
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// retrieve the vertex ID for the high end & update for pruning
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vtkm::Id highEnd = prunesTo.Get(chainExtremum.Get(edgeFar.Get(edgeID)));
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// we want to ignore edges that lead back to this vertex
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if (highEnd != vertexID)
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{
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// reset the high end of the edge, copying downwards
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edgeFar.Set(edgeID, highEnd);
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// and keep the edge around
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newActiveEdges.Set(whichEdge++, edgeID);
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// and reset the chain maximum for good measure
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chainExtremum.Set(vertexID, highEnd);
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}
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}
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// now reset the firstEdge variable for this vertex
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outdegree.Set(vertexID, newOutdegree);
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firstEdge.Set(vertexID, newPosition);
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}
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}; // ActiveEdgeTransferrer
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}
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}
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}
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#endif
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