Commit Graph

252 Commits

Author SHA1 Message Date
Kenneth Moreland
2f04dc3aef Simplify creating metadata in Buffer objects
Previously you had to create a special virtual object to place in the
`Buffer`'s metadata. This added a lot of difficulty that is probably
unnecessary.

Instead, just have `Buffer` hold an arbitrary object and some simple
functions to copy and delete it. There may be issues with type safety
across translation units, but we'll deal with that when/if we run into
it.
2020-11-10 16:22:05 -07:00
Kenneth Moreland
132a07225d Merge topic 'precompiled-field-get-range'
a88e0d914 Reintroduce ArrayRangeCompute.hxx as deprecated
7d681fb58 Deprecate templated versions of Field::GetRange

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !2296
2020-11-10 13:49:45 -05:00
Kenneth Moreland
a88e0d9149 Reintroduce ArrayRangeCompute.hxx as deprecated
ArrayRangeCompute.hxx was removed, but other code may be including it.
The file was replaced. It now just includes its replacement
(ArrayRangeComputeTemplate.h) and forces a deprecation warning.
2020-11-10 09:58:50 -07:00
Kenneth Moreland
cc729f422b Convert ArrayHandleDiscard to new buffer-style arrays 2020-11-09 15:45:45 -07:00
Kenneth Moreland
7d681fb585 Deprecate templated versions of Field::GetRange
Instead, always use precompiled versions of range computing. This means
you won't be able to specify the type. Currently, types are limited to
scalars vecs up to size 4.

The main motivation for this change is to allow you to include Field.h
with a non-device compiler. This is an important feature for our
customers.

I plan in the future to implement a mechanism to pull out a component of
most ArrayHandle's as a single array. This would enable us to support a
precompiled version that can compute the range of arbitrarily sized
Vecs.
2020-11-09 12:28:29 -07:00
Kenneth Moreland
f66dc780c5 Update ArrayHandleImplicit to new array style with Buffer
Also updated the dependent `ArrayHandle`s that use
`ArrayHandleImplicit`'s storage.
2020-10-21 08:36:29 -06:00
Kenneth Moreland
b012c42beb Rename CellLocatorUniformBins to CellLocatorTwoLevel
The new name is more descriptive and prevents confusion with
CellLocatorUniformGrid.
2020-09-21 15:42:47 -06:00
Kenneth Moreland
c9b763aca9 Rename PointLocatorUniformGrid to PointLocatorSparseGrid
The new name reflects better what the underlying algorithm does. It also
helps prevent confusion about what types of data the locator is good
for. The old name suggested it only worked for structured grids, which
is not the case.
2020-09-21 15:42:41 -06:00
Kenneth Moreland
2e918c58dc Move ColorTable mapping to its own header
We would really like to be able to include `vtkm::cont::ColorTable` in
such a way that you don't have to compile device code (unless you are
actually compiling functions for the device). Thus, the `Map` functions
of `ColorTable` were in a special `ColorTable.hxx` that contains the
"implementation" for `ColorTable`.

That is confusing to many users. It is more clear to simply have `.h`
headers that do a specific thing. To achieve these two goals, the `Map`
functionality of `ColorTable` is separated out into its own header file.
So you don't need to be using a device compiler just to use `ColorTable`
(including `ColorTable.h`), but you do need to use a device compiler if
mapping values to colors (including `ColorTableMap.h`).
2020-09-14 16:40:26 -06:00
Kenneth Moreland
63ef84ed78 Optionally remove all use of ArrayHandleVirtual
As we remove more and more virtual methods from VTK-m, I expect several
users will be interested in completely removing them from the build for
several reasons.

1. They may be compiling for hardware that does not support virtual
methods.
2. They may need to compile for CUDA but need shared libraries.
3. It should go a bit faster.

To enable this, a CMake option named `VTKm_NO_DEPRECATED_VIRTUAL` is
added. It defaults to `OFF`. But when it is `ON`, none of the code that
both uses virtuals and is deprecated will be built.

Currently, only `ArrayHandleVirtual` is deprecated, so the rest of the
virtual classes will still be built. As we move forward, more will be
removed until all virtual method functionality is removed.
2020-09-04 22:52:45 -06:00
Kenneth Moreland
bb443bbc24 Replace the implementation of VariantArrayHandle
The implementation of `VariantArrayHandle` has been changed to be a
relatively trivial subclass of `UnknownArrayHandle`.

The advantage of this change is twofold. First, it removes
`VariantArrayHandle`'s dependence on `ArrayHandleVirtual`, which gets us
much closer to deprecating that class. Second, it ensures that
`UnknownArrayHandle` is a reasonable replacement for
`VariantArrayHandle`, so we can move forward with replacing that.
2020-09-02 15:02:44 -06:00
Kenneth Moreland
94aa6449b9 Add UncertainArrayHandle 2020-08-31 09:46:57 -06:00
Kenneth Moreland
e47cedd972 Add UnknownArrayHandle 2020-08-31 09:46:56 -06:00
Kenneth Moreland
4345fe26b0 Store the number of bits of a BitField in the Buffer's metadata
The number of bits in a `BitField` cannot be directly implied from the
size of the buffer (because the buffer gets padded to the nearest sized
word). Thus, the `BitField stored the number of bits in its own
internals.

Unfortunately, that caused issues when passing the `BitField` data
between it and an `ArrayHandleBitField`. If the `ArrayHandleBitField`
resized itself, the `BitField` would not see the new size because it
ignored the new buffer size.

To get around this problem, `BitField` now declares its own
`BufferMetaData` that stores the number of bits. Now, since the number
of bits is stored in the `Buffer` object, it is sufficient to just share
the `Buffer` to synchronize all of the state.
2020-08-24 17:09:30 -06:00
Sujin Philip
452f61e290 Add Kokkos backend 2020-08-12 13:55:24 -04:00
dpugmire
31c97bed89 Generalize fields for particle advection 2020-07-20 21:15:46 -04:00
Kenneth Moreland
be7f06bbe7 CoordinateSystem data is VariantArrayHandle
`CoordinateSystem` differed from `Field` in that its `GetData`
method returned an `ArrayHandleVirtualCoordinates` instead of
a `VariantArrayHandle`. This is probably confusing since
`CoordianteSystem` inherits `Field` and has a pretty dramatic
difference in this behavior.

In preparation to deprecate `ArrayHandleVirtualCoordinates`, this
changes `CoordiantSystem` to be much more like `Field`. (In the
future, we may change the `CoordinateSystem` to point to a `Field`
rather than be a special `Field`.)

A method named `GetDataAsMultiplexer` has been added to
`CoordinateSystem`. This method allows you to get data from
`CoordinateSystem` as a single array type without worrying
about creating functors to handle different types and without
needing virtual methods.
2020-07-14 08:50:39 -06:00
Kenneth Moreland
56bec1dd7b Replace basic ArrayHandle implementation to use Buffers
This encapsulates a lot of the required memory management into the
Buffer object and related code.

Many now unneeded classes were deleted.
2020-06-25 14:02:26 -06:00
Kenneth Moreland
8f7b0d18be Add Buffer class
The buffer class encapsulates the movement of raw C arrays between
host and devices.

The `Buffer` class itself is not associated with any device. Instead,
`Buffer` is used in conjunction with a new templated class named
`DeviceAdapterMemoryManager` that can allocate data on a given
device and transfer data as necessary. `DeviceAdapterMemoryManager`
will eventually replace the more complicated device adapter classes
that manage data on a device.

The code in `DeviceAdapterMemoryManager` is actually enclosed in
virtual methods. This allows us to limit the number of classes that
need to be compiled for a device. Rather, the implementation of
`DeviceAdapterMemoryManager` is compiled once with whatever compiler
is necessary, and then the `RuntimeDeviceInformation` is used to
get the correct object instance.
2020-06-25 14:01:39 -06:00
Li-Ta Lo
980c4864ac Merge branch 'master' into standard_normal 2020-06-24 14:38:50 -06:00
dpugmire
0654d1853d fix cuda compile, export function. 2020-06-19 10:57:30 -04:00
dpugmire
bac9664104 Move array copy to cxx 2020-06-18 17:53:19 -04:00
dpugmire
24451a3de2 Create a function for copying fields from particle arrays. 2020-06-18 14:54:18 -04:00
Li-Ta Lo
2aea7534bd Add ArrayHandleRandomStandardNormal 2020-06-17 15:48:09 -06:00
Li-Ta Lo
e9f584a91f ArrayHandleRandomUniformReal
Add an ArrayHandle for generating random Float64 in the range of [0, 1).
2020-06-02 11:58:57 -06:00
Robert Maynard
5061d43f5a vtkm_option should be used as it properly handles CMP0077
Without using vtkm_option, you will run into CMP0077 which
means "option() won't honor normal variables".
2020-04-01 08:52:07 -04:00
Robert Maynard
8810fc2fa6 Merge topic 'philox'
ef49a71aa Merge branch 'philox' of gitlab.kitware.com:ollielo/vtk-m into philox
563642400 remove outdated comments on type-punning
be7c18544 tried to supress warning about type punning
c795f74b2 Merge branch 'master' into philox
2b43fcb25 change function signature for work with MSVC
13e7ac362 Merge branch 'philox' of gitlab.kitware.com:ollielo/vtk-m into philox
1e2fd540d add Doxygen documentation
f2ea17917 add Doxygen documentation
...

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1990
2020-03-25 13:17:50 -04:00
Kenneth Moreland
545e60fbe3 Merge topic 'no-streaming-arrayhandle'
4f9fa08fa Remove ArrayHandleStreaming capabilities

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !2008
2020-03-25 11:26:26 -04:00
Kenneth Moreland
4f9fa08fa1 Remove ArrayHandleStreaming capabilities
The `ArrayHandleStreaming` class stems from an old research project
experimenting with bringing data from an `ArrayHandle` in parts and
overlapping device transfer and execution. It works, but only in very
limited contexts. Thus, it is not actually used today. Plus, the feature
requires global indexing to be permutated throughout the worklet
dispatching classes of VTK-m for no further reason.

Because it is not really used, there are other more promising approaches
on the horizon, and it makes further scheduling improvements difficult,
we are removing this functionality.
2020-03-24 15:01:56 -06:00
Li-Ta Lo
c795f74b24 Merge branch 'master' into philox 2020-03-23 08:28:02 -06:00
Kenneth Moreland
dc112b5169 Enable changing policy used for library compiles
Previously, the PolicyDefault used to compile all the filters was hard-
coded. The problem was that if any external project that depends on VTK-
m needs a different policy, it had to recompile everything in its own
translation units with a custom policy.

This change allows an external project provide a simple header file that
changes the type lists used in the default policy. That allows VTK-m to
compile the filters exactly as specified by the external project.
2020-03-19 15:07:07 -06:00
Li-Ta Lo
46813d4e90 Incorporating Ken's commnet
Rename class, directory and namespace names, remove convinience function.
2020-03-18 16:03:47 -06:00
Kenneth Moreland
75a46dc2eb Remove tao tuple from third party libraries
We are no longer using this code. It has been replaced by vtkm::Tuple.
2020-03-16 17:12:17 -06:00
Li-Ta Lo
23a0166048 Add ArrayHandlePhiloxURBG
Add implementation and unit tests for ArrayHandlePhiloxURBG
2020-03-13 11:39:57 -06:00
Kenneth Moreland
8569359e14 Add threads library to vtkm_cont
With the new thread safety/token code, the vtkm_cont library now relies
on the pthreads library (or whatever threads library is used by std on
the system). Make sure this library gets added to vtkm_cont.
2020-02-26 13:10:50 -07:00
Kenneth Moreland
a49fa83035 Add Token 2020-02-25 07:41:36 -07:00
Kenneth Moreland
92db376236 Convert uses of ListTagBase to List 2019-12-06 15:37:46 -07:00
Sujin Philip
b0592ce4c8 Switch from VTK-c to LCL 2019-10-07 15:38:36 -04:00
Sujin Philip
e08d862f94 Use Light-Weight Cell Library 2019-09-24 21:22:10 -04:00
Allison Vacanti
885cce3914 Add ArrayPortalDecorator. 2019-09-11 12:50:59 -04:00
Allison Vacanti
63050f68fc MultiBlock renamed to PartitionedDataSet
The `MultiBlock` class has been renamed to `PartitionedDataSet`, and its API
has been refactored to refer to "partitions", rather than "blocks".
Additionally, the `AddBlocks` method has been changed to `AppendPartitions` to
more accurately reflect the operation performed. The associated
`AssignerMultiBlock` class has also been renamed to
`AssignerPartitionedDataSet`.

This change is motivated towards unifying VTK-m's data model with VTK. VTK has
started to move away from `vtkMultiBlockDataSet`, which is a hierarchical tree
of nested datasets, to `vtkPartitionedDataSet`, which is always a flat vector
of datasets used to assist geometry distribution in multi-process environments.
This simplifies traversal during processing and clarifies the intent of the
container: The component datasets are partitions for distribution, not
organizational groupings (e.g. materials).

Ref #405
2019-09-03 12:42:23 -04:00
Allison Vacanti
399f23963e Add ArrayGetValue[s] to address issue #355. 2019-08-22 11:16:16 -04:00
Kenneth Moreland
869d665806 Add ArrayHandleSOA
This ArrayHandle should behave just like the one with basic storage but
external arrays stored by component can be shallow-copied to them.
2019-08-20 12:09:54 -06:00
Robert Maynard
7e04b0511f Move Invoker into vtkm/cont
The Invoker is a control side object that handles the construction
of the relevant worklet dispatcher. Moving it to control makes it
obvious that it isn't an algorithm itself but a way to launch
worklets.
2019-08-01 12:34:27 -04:00
Kenneth Moreland
5e23853521 Create ArrayHandleMultiplexer 2019-07-22 08:36:28 -06:00
Robert Maynard
e934e2273c vtkm_library WRAP_FOR_CUDA renamed to clarify the intent of the property
We want the option name to be clear that it might be applicable for
more than just CUDA. If VTK-m ever supported something like SYCL
it would not be clear that those sources should go in `WRAP_FOR_CUDA`.
2019-07-09 13:04:07 -04:00
Mark Kim
8a3528d700 consolidate some files
ArrayPortalExtrude and ArrayPortalExtrudePlane
merged into StorageExtrude.h
2019-06-22 00:48:12 -04:00
Mark Kim
cffd3873fc Merge branch 'advdatamodel' 2019-06-20 22:20:44 -04:00
Mark Kim
6e1d3a84f0 First Extrude commit.
how did any of this work?

match other CellSet file layouts.

???

compile in CUDA.

unit tests.

also only serial.

make error message accurate

Well, this compiles and works now.

Did it ever?

use CellShapeTagGeneric

UnitTest matches previous changes.

whoops

Fix linking problems.

Need the same interface

as other ThreadIndices.

add filter test

okay, let's try duplicating CellSetStructure.

okay

inching...

change to wedge in CellSetListTag

Means changing these to support it.

switch back to wedge from generic

compiles and runs

remove ExtrudedType

need vtkm_worklet

vtkm_worklet needs to be included

fix segment count for wedge specialization

need to actually save the index

for the other constructor.

specialize on Explicit

clean up warning

angled brackets not quotes.

formatting
2019-06-20 22:17:24 -04:00
Robert Maynard
171fdffd0e Make sure vtkm_cont links to vtkm_loguru when logging enabled 2019-06-19 09:52:43 -04:00