Commit Graph

2176 Commits

Author SHA1 Message Date
Allison Vacanti
41894a97b3 Unroll reduction loops for non-integral types on OpenMP. 2019-07-16 14:47:41 -04:00
Allison Vacanti
e30cb08725 Fix OpenMP for gcc-9 backwards incompatibility.
For details, see

https://www.gnu.org/software/gcc/gcc-9/porting_to.html
2019-07-16 14:47:31 -04:00
Robert Maynard
c80c1d09c0 Merge topic 'refactor_vtkm_buildsystem_to_provide_better_consumer_experience'
28484fc6a Update examples and benchmarks to use new VTK-m CMake helper function
ea50e82aa Move VTK-m CMake testing wrappers to the testing folder
0b7dd7c38 Add CMake vtkm_add_target_information() to make using vtk-m easier
e934e2273 vtkm_library WRAP_FOR_CUDA renamed to clarify the intent of the property
a2e6660fd Remove unused vtkm_compile_as_cuda CMake function

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Matt Larsen <larsen30@llnl.gov>
Merge-request: !1718
2019-07-16 08:46:22 -04:00
Abhishek Yenpure
c2fa0467c1 Adding support for evaluating 2D meshes.
- Adding support for evaluating 2D meshes using Rectilinear Grids
- Adding support for particle advection for 2D meshes
2019-07-11 10:45:30 -07:00
Li-Ta Lo
2c6061d37f Merge topic 'locate-points-on-boundary'
461f87dbc Fix issues with PointLocatorUniformGrid not finding all points
e473cb4bb Fix PointLocatorUniformGrid for points on boundary

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Li-Ta Lo <ollie@lanl.gov>
Merge-request: !1720
2019-07-11 10:48:49 -04:00
Kenneth Moreland
e473cb4bbc Fix PointLocatorUniformGrid for points on boundary
When creating the search structures in PointLocatorUniformGrid, a point
outside the boundary would be given an invalid bin id. These points
could never be found. Generally, this is not a big deal for points
outside of the boundary, but it could be a problem for points on the
boundary. A point on the boundary could be taken as outside the
boundary. Since the boundary is chosen from limits of the points, some
will almost always be on the boundary.

Fix this problem by clamping all points to the nearest valid bin. This
could cause a problem if the user has selected a boundary excluding a
lot of points. All those points could be grouped to the same edge bins,
but that is probably not a great idea anyway.
2019-07-10 08:35:45 -06:00
Robert Maynard
e934e2273c vtkm_library WRAP_FOR_CUDA renamed to clarify the intent of the property
We want the option name to be clear that it might be applicable for
more than just CUDA. If VTK-m ever supported something like SYCL
it would not be clear that those sources should go in `WRAP_FOR_CUDA`.
2019-07-09 13:04:07 -04:00
Dave Pugmire
fc69b9c1bc Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into polyLinePathGeom 2019-07-03 10:47:13 -04:00
Robert Maynard
9213038aa2 Make sure all vtkm/cont .hxx files have header guards
Make it easier for consumer to only include hxx files a single
time.
2019-07-01 14:03:40 -04:00
Allison Vacanti
938a116dc2 Fix brace initialization of std::atomic for gcc 4.8. 2019-07-01 10:15:19 -04:00
Mark Kim
8dbb1c4de3 Merge branch 'master' of gitlab.kitware.com:m-kim/vtk-m into advdatamodel 2019-06-26 19:37:47 -04:00
Mark Kim
f3f71eb141 Don't need this. 2019-06-26 19:37:35 -04:00
Dave Pugmire
9132e75ac8 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into polyLinePathGeom 2019-06-26 09:55:46 -04:00
Allison Vacanti
920ef9b3b9 Merge topic 'bit_algorithms'
f370857c1 Add CountSetBits and Fill device algorithms.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1696
2019-06-25 15:42:16 -04:00
Allison Vacanti
f370857c15 Add CountSetBits and Fill device algorithms. 2019-06-25 11:30:39 -04:00
Mark Kim
699b57191f Merge branch 'master' of gitlab.kitware.com:m-kim/vtk-m into advdatamodel 2019-06-25 10:36:47 -04:00
Mark Kim
a5027d74d2 clean up warnings.
In clang and vc++
2019-06-24 22:10:32 -04:00
Mark Kim
a941f0aea3 pass arrayhandle to ArrayHandleExtrudeCoords
which passes directly to storage to avoid a copy.
2019-06-24 15:15:20 -04:00
Mark Kim
8a3528d700 consolidate some files
ArrayPortalExtrude and ArrayPortalExtrudePlane
merged into StorageExtrude.h
2019-06-22 00:48:12 -04:00
Mark Kim
c47ee35fd1 better c++ encapsulation. 2019-06-21 23:01:03 -04:00
Mark Kim
b9448131d5 Fix visual studio error. 2019-06-21 20:51:44 -04:00
Mark Kim
fc479aa02c fix warnings 2019-06-21 14:39:23 -04:00
Mark Kim
876727d81f tbb testing needs vtkm_worklet
as library
2019-06-21 14:37:22 -04:00
Mark Kim
978fc2b9c2 Copyright notices. 2019-06-21 11:35:46 -04:00
Dave Pugmire
b348522d17 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into polyLinePathGeom 2019-06-21 09:46:45 -04:00
Mark Kim
cffd3873fc Merge branch 'advdatamodel' 2019-06-20 22:20:44 -04:00
Mark Kim
6e1d3a84f0 First Extrude commit.
how did any of this work?

match other CellSet file layouts.

???

compile in CUDA.

unit tests.

also only serial.

make error message accurate

Well, this compiles and works now.

Did it ever?

use CellShapeTagGeneric

UnitTest matches previous changes.

whoops

Fix linking problems.

Need the same interface

as other ThreadIndices.

add filter test

okay, let's try duplicating CellSetStructure.

okay

inching...

change to wedge in CellSetListTag

Means changing these to support it.

switch back to wedge from generic

compiles and runs

remove ExtrudedType

need vtkm_worklet

vtkm_worklet needs to be included

fix segment count for wedge specialization

need to actually save the index

for the other constructor.

specialize on Explicit

clean up warning

angled brackets not quotes.

formatting
2019-06-20 22:17:24 -04:00
Robert Maynard
1ea386222e cuda copy functions don't launch on length zero arrays 2019-06-20 16:54:23 -04:00
Robert Maynard
68cb906ae3 Merge topic 'correct_ubsan_undefined_behavior'
512d0431e Cell and Point locators have correct export visibility
c7f827581 Correct signed to unsigned warning conversion found by clang-8
c28797845 Gradient's ComputeDivergence is now properly initialized

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Allison Vacanti <allison.vacanti@kitware.com>
Merge-request: !1705
2019-06-19 14:41:58 -04:00
Robert Maynard
8d4611387a Simplify Timer now that RuntimeDeviceTracker handles 'any' device. 2019-06-19 10:50:44 -04:00
Robert Maynard
171fdffd0e Make sure vtkm_cont links to vtkm_loguru when logging enabled 2019-06-19 09:52:43 -04:00
Robert Maynard
c7f8275818 Correct signed to unsigned warning conversion found by clang-8 2019-06-19 08:36:19 -04:00
Robert Maynard
6734ddcec2 Merge topic 'log_cuda_version_worklet_are_launched_with'
8aaf922aa Introduce a log level that details kernel launch parameters

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Allison Vacanti <allison.vacanti@kitware.com>
Merge-request: !1672
2019-06-19 08:32:27 -04:00
Robert Maynard
d4932c49d1 Merge topic 'cleanup_thirdparty_related_code'
9dc8b06df Cleanup logic surrounding the usage of vtkm thirdparty libraries
7454242e5 Cleanup unnecessary thirdparty exclusions

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1703
2019-06-18 17:35:45 -04:00
Robert Maynard
9dc8b06dfb Cleanup logic surrounding the usage of vtkm thirdparty libraries 2019-06-18 16:08:42 -04:00
Robert Maynard
8aaf922aa4 Introduce a log level that details kernel launch parameters 2019-06-18 15:01:07 -04:00
Dave Pugmire
03e7b77fc9 Initial modifications for tube filter. 2019-06-18 10:38:41 -04:00
Allison Vacanti
dff7c40d0c Provide better error messages when misusing a BitPortalConst. 2019-06-14 15:26:55 -04:00
Allison Vacanti
990b0241a3 Merge topic 'update_loguru'
1002c038e Merge branch 'upstream-loguru' into update_loguru
0624ac777 loguru 2019-03-21 (862ed46e)
331c2d569 Update to latest loguru for MSVC fixes.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1687
2019-06-13 13:10:05 -04:00
Kenneth Moreland
2641f2fdd2 Merge topic 'test-equal-recursive-types'
2e0f4dd37 Fix floating point error in test
b766d9a92 Improve support of testing recursive types

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1691
2019-06-12 12:44:52 -04:00
Allison Vacanti
331c2d5690 Update to latest loguru for MSVC fixes. 2019-06-12 10:07:51 -04:00
Allison Vacanti
9e02635ea9 Fix type name in debug message. 2019-06-12 09:56:25 -04:00
Kenneth Moreland
2e0f4dd376 Fix floating point error in test
The UnitTestCudaArrayHandleFancy was failing because it was
was calling TestValue in a worklet and comparing that to
a value that was generated by calling TestValue on the host.
Because these were called on different architecture, it is
possible that they will not be bit-wise exact. Add a little
bit of tolerance to the check to avoid false failures for
this reason.
2019-06-11 15:57:12 -06:00
Kenneth Moreland
f11702ae92 Fix for rogue definition of PASCAL macro 2019-06-05 10:09:49 -06:00
Robert Maynard
095e288383 Merge topic 'better_scoped_rt_dt'
bcaf7d9be ScopedRuntimeDeviceTracker have better controls of setting devices.
4212d0c04 RuntimeDeviceInformation now says the AnyTag exists.
fa03dc664 ScopedRuntimeDeviceTracker requires a device to execute on when constructed.
4020f5198 RuntimeDeviceTracker can't be copied and is only accessible via reference.
e9482018e ScopedRuntimeDeviceTracker has the same API as RuntimeDeviceTracker

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1676
2019-05-24 16:45:22 -04:00
Robert Maynard
3a4bffe538 Make sure methods that are used by multiple TU's are inline.
These methods need to be marked inline as they are used by multiple
TU's. When they aren't marked as inline we see random failures in
downstream VTK-m users generally when CUDA is enabled due to ODR
violations.
2019-05-22 15:24:57 -04:00
Robert Maynard
bcaf7d9beb ScopedRuntimeDeviceTracker have better controls of setting devices.
The ScopedRuntimeDeviceTracker now can force, enable, or disable
devices. Additionally the ScopedRuntimeDeviceTracker and the
RuntimeDeviceTracker handle the DeviceAdapterTagAny robustly
across all methods.
2019-05-21 15:32:10 -04:00
Robert Maynard
4212d0c04f RuntimeDeviceInformation now says the AnyTag exists. 2019-05-21 15:15:06 -04:00
Robert Maynard
fa03dc664a ScopedRuntimeDeviceTracker requires a device to execute on when constructed.
To simplify using the ScopedRuntimeDeviceTracker it now takes the
device id you want to run on during construction.
2019-05-21 11:17:37 -04:00
Robert Maynard
4020f51988 RuntimeDeviceTracker can't be copied and is only accessible via reference.
As the RuntimeDeviceTracker is a per thread construct we now make
it explicit that you can only get a reference to the per-thread
version and can't copy it.
2019-05-20 11:43:05 -04:00
Robert Maynard
1b62901e96 Empty DynamicCellSet doesn't segfault on certain queries.
Fixes #370
2019-05-16 08:29:17 -04:00
Robert Maynard
e9482018ee ScopedRuntimeDeviceTracker has the same API as RuntimeDeviceTracker 2019-05-15 17:26:31 -04:00
Robert Maynard
850aa44be4 Merge topic 'cuda_hpc_defaults'
d1ce4a0bc Fix the default launch sizes for Tesla hardware.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1667
2019-05-07 14:40:48 -04:00
Robert Maynard
1e1cf21024 Merge topic 'better_stealarray_api'
674fe1fbf StealArray now returns the array and free function as a Pair.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1664
2019-05-06 17:46:24 -04:00
Robert Maynard
d1ce4a0bca Fix the default launch sizes for Tesla hardware.
The 8x8x8 is a better launch strategy for most VTK-m kernels.
The current problem is that a couple of VTK-m kernels use a
high number of registers and this number of threads combines to
require too many registers.

What we should do in the longer run is have more controls over
kernel launches on a per kernel basis. This will require VTK-m
to extract the number of registers being used by each kernel
2019-05-06 16:12:15 -04:00
Robert Maynard
41b8236a25 For GCC 4.8.4 'half' shadows a global variable with that name 2019-05-02 10:27:48 -04:00
Robert Maynard
770912f991 Correct compiler issues found with GCC 4.8.5 + CUDA 9.2 on summit 2019-05-02 10:27:48 -04:00
Robert Maynard
b248b2c939 Correct unused-parameter warnings from defaulted methods.
GCC 4.8.5 warns about defaulted methods when parameters have names.
2019-05-02 10:27:48 -04:00
Robert Maynard
674fe1fbf2 StealArray now returns the array and free function as a Pair.
This helps reduces bugs when the callers ask to steal arrays
without getting the free function, or ask for the free function
after stealing the array.
2019-05-01 09:42:57 -04:00
Robert Maynard
75bf9d361c Merge topic 'testing_device_adapter_remove_array_manager_execution_usage'
065d11783 Testing Device Adapter now uses ArrayHandle for all device transfers

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1651
2019-05-01 08:22:10 -04:00
Robert Maynard
a896f77988 Merge topic 'warnings_gcc_64'
3dda0ab2d Correct unused-parameter warnings from defaulted methods.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1663
2019-05-01 08:19:30 -04:00
Robert Maynard
065d117838 Testing Device Adapter now uses ArrayHandle for all device transfers
The consistent API for control to execution memory transfers is
the ArrayHandle class. Previously the tests would verify memory
transfer by calling the ArrayManagerExecution class directly. This
is problematic as the class isn't used by ArrayHandle<T, StorageBasic>.
2019-04-30 13:50:08 -04:00
Robert Maynard
3dda0ab2d6 Correct unused-parameter warnings from defaulted methods.
GCC 6 warns about defaulted methods when parameters have names.
2019-04-30 13:12:32 -04:00
Robert Maynard
a3df54017b Merge topic 'correct_leaks_found_by_asan'
27426b7bc Fix warnings found with clang-8 inside the OpenMP device adapter.
cec9af64b Update the lsan suppression to capture tbb leaks.
8ef2c4be7 TransferInfo doesn't leak when holding VirtualObjectTransferShareWithControl

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1661
2019-04-30 08:17:38 -04:00
Robert Maynard
f3c038f6e0 Merge topic 'mark_more_methods_as_control_side_only'
d468784f0 Correct more host/device warnings from methods that should be host only

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1660
2019-04-29 17:12:18 -04:00
Robert Maynard
27426b7bcc Fix warnings found with clang-8 inside the OpenMP device adapter. 2019-04-29 17:05:10 -04:00
Robert Maynard
8ef2c4be72 TransferInfo doesn't leak when holding VirtualObjectTransferShareWithControl
When TransferInfo is given memory from VirtualObjectTransferShareWithControl
it doesn't have a bound function ptr for the destruction. In those cases
we need to make sure the HostCopyOfDevice is properly deleted, otherwise
we will cause a memory leak.
2019-04-29 15:51:19 -04:00
Robert Maynard
33a30299d7 Merge topic 'more_minor_style_and_export_corrections'
bdabfbe11 Make sure ArrayPortalUniformPointCoordinates constructor is explicit
b3d951b50 vtkm::Range Include function now requires half as many min/max calls
ddaa0df26 ArrayHandleVirtualCoordinates now calls the proper parent constructor
61e800379 Make sure all execution side CellLocator objects have explicit destructors
307898ff6 Cleanup the CellLocatorBoundingIntervalHierarchy.cxx style.
0f31c69f3 Remove unnecessary constructor from ParameterContainer

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1657
2019-04-29 14:17:55 -04:00
Robert Maynard
d468784f00 Correct more host/device warnings from methods that should be host only 2019-04-29 13:15:42 -04:00
Robert Maynard
ddaa0df261 ArrayHandleVirtualCoordinates now calls the proper parent constructor
Previously it was calling the ArrayHandle<T,StorageTagVirtual>
constructor and not the ArrayHandleVirtual constructor which
generated a warning with some compilers
2019-04-26 10:11:04 -04:00
Robert Maynard
61e8003793 Make sure all execution side CellLocator objects have explicit destructors 2019-04-26 10:10:21 -04:00
Sujin Philip
ee2999d19b Some classes should be exported 2019-04-25 09:50:49 -04:00
Robert Maynard
307898ff65 Cleanup the CellLocatorBoundingIntervalHierarchy.cxx style. 2019-04-24 10:13:35 -04:00
Robert Maynard
63c931e639 Correct location of ThrustPatches which clang formatter moved 2019-04-23 15:02:58 -04:00
Robert Maynard
bd544754a4 Merge topic 'no_odr_violation_on_cuda_tag'
ff687016e For VTK-m libs all includes of DeviceAdapterTagCuda happen from cuda files

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1648
2019-04-23 14:40:38 -04:00
Robert Maynard
ff687016ee For VTK-m libs all includes of DeviceAdapterTagCuda happen from cuda files
It is very easy to cause ODR violations with DeviceAdapterTagCuda.
If you include that header from a C++ file and a CUDA file inside
the same program we an ODR violation. The reasons is that the C++
versions will say the tag is invalid, and the CUDA will say the
tag is valid.

The solution to this is that any compilation unit that includes
DeviceAdapterTagCuda from a version of VTK-m that has CUDA enabled
must be invoked by the cuda compiler.
2019-04-22 10:39:54 -04:00
Sujin Philip
13ef17eaa7 Remove thread_local from RuntimeDeviceNames
Older Mac compilers that are still supported by VTK don't support
`thread_local`.
2019-04-19 16:03:48 -04:00
Robert Maynard
d8cc067caa Remove DeviceAdapterError as it isn't needed any more.
Fixes #277

DeviceAdapterError existed to make sure that the default device adapter
template was being handled properly. Since the default device adapter doesn't
exist, and nothing is templated over it we can now remove DeviceAdapterError.
2019-04-18 15:09:57 -04:00
Robert Maynard
2c026508b3 Merge topic 'correct_openmp_timeouts'
9c2920072 UnitTestBoundingIntervalHierarchy handles systems under load better
671c1df5c Timer logs the proper device name when called with an invalid device
d3d66a331 GameOfLife example always uses the proper device adapter

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1645
2019-04-18 08:05:12 -04:00
Robert Maynard
671c1df5c9 Timer logs the proper device name when called with an invalid device 2019-04-17 16:01:15 -04:00
nadavi
fbcea82e78 conslidate the license statement 2019-04-17 10:57:13 -06:00
Robert Maynard
6c5c197a37 Merge topic 'support_cuda_scheduling_parameters_via_runtime'
047b64651 VTK-m now provides better scheduling parameters controls

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1643
2019-04-17 10:04:19 -04:00
Robert Maynard
047b646517 VTK-m now provides better scheduling parameters controls
VTK-m now offers a more GPU aware set of defaults for kernel scheduling.
When VTK-m first launches a kernel we do system introspection and determine
what GPU's are on the machine and than match this information to a preset
table of values. The implementation is designed in a way that allows for
VTK-m to offer both specific presets for a given GPU ( V100 ) or for
an entire generation of cards ( Pascal ).

Currently VTK-m offers preset tables for the following GPU's:
- Tesla V100
- Tesla P100

If the hardware doesn't match a specific GPU card we than try to find the
nearest know hardware generation and use those defaults. Currently we offer
defaults for
- Older than Pascal Hardware
- Pascal Hardware
- Volta+ Hardware

Some users have workloads that don't align with the defaults provided by
VTK-m. When that is the cause, it is possible to override the defaults
by binding a custom function to `vtkm::cont::cuda::InitScheduleParameters`.
As shown below:

```cpp
  ScheduleParameters CustomScheduleValues(char const* name,
                                          int major,
                                          int minor,
                                          int multiProcessorCount,
                                          int maxThreadsPerMultiProcessor,
                                          int maxThreadsPerBlock)
  {

    ScheduleParameters params  {
        64 * multiProcessorCount,  //1d blocks
        64,                        //1d threads per block
        64 * multiProcessorCount,  //2d blocks
        { 8, 8, 1 },               //2d threads per block
        64 * multiProcessorCount,  //3d blocks
        { 4, 4, 4 } };             //3d threads per block
    return params;
  }
  vtkm::cont::cuda::InitScheduleParameters(&CustomScheduleValues);
```
2019-04-17 08:32:16 -04:00
Robert Maynard
ff30684c8e Removes the default device macros from VTK-m
Fixes #116
2019-04-15 08:15:36 -04:00
Robert Maynard
a5dbe1ece3 Merge topic 'bitfields'
661fb64de AtomicInterfaceControl functions are marked with VTKM_SUPPRESS_EXEC_WARNINGS
0c70f9b9a Add BitFieldIn/Out/InOut worklet signature tags.
a66510e81 Add ArrayHandleBitField, a boolean-valued AH backed by a BitField.
56cc5c3d3 Add support for BitFields.
d01b97382 Allow VTKM_SUPPRESS_EXEC_WARNINGS to be used inside macros.
2f2ca9370 Add bit operations FindFirstSetBit and CountSetBits to Math.h.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1629
2019-04-11 12:32:03 -04:00
Robert Maynard
0e847f2cb8 Merge topic 'remove_cellset_need_of_default_device'
46843ff4e CellSetExplicit has no dependency on default vtk-m device

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1636
2019-04-11 10:40:10 -04:00
Robert Maynard
661fb64de8 AtomicInterfaceControl functions are marked with VTKM_SUPPRESS_EXEC_WARNINGS 2019-04-11 10:01:32 -04:00
Allison Vacanti
0c70f9b9ac Add BitFieldIn/Out/InOut worklet signature tags.
These provide an appropriate BitPortal for use in worklets.
2019-04-11 08:27:17 -04:00
Allison Vacanti
a66510e819 Add ArrayHandleBitField, a boolean-valued AH backed by a BitField. 2019-04-11 08:27:17 -04:00
Allison Vacanti
56cc5c3d3a Add support for BitFields.
BitFields are:
- Stored in memory using a contiguous buffer of bits.
- Accessible via portals, a la ArrayHandle.
- Portals operate on individual bits or words.
- Operations may be atomic for safe use from concurrent kernels.

The new BitFieldToUnorderedSet device algorithm produces an ArrayHandle
containing the indices of all set bits, in no particular order.

The new AtomicInterface classes provide an abstraction into bitwise
atomic operations across control and execution environments and are used
to implement the BitPortals.
2019-04-11 08:27:17 -04:00
Robert Maynard
9cf1dc1883 Merge topic 'cuda_reduce_handle_pair_output'
89ec4aae2 Reduction on CUDA handles different input and output types better

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1638
2019-04-10 19:17:23 -04:00
Robert Maynard
89ec4aae2f Reduction on CUDA handles different input and output types better
When reducing an input type that differs from the output type
you need to write a custom binary operator that also implements
how to do the unary transformation.
2019-04-10 14:44:44 -04:00
Robert Maynard
46843ff4ee CellSetExplicit has no dependency on default vtk-m device
The default vtk-m device is an outdated concept and this is the
first step of removing it from VTK-m.
2019-04-10 14:28:30 -04:00
Sujin Philip
b391acf4c0 Remove SimplePolymorphicContainer
The last place remaining where it is being used is DynamicCellSet, which can
instead use `vtkm::cont::CellSet` as it itself is polymorphic.
2019-04-10 14:00:39 -04:00
Robert Maynard
ece078b82f Merge topic 'clang_warnings'
0130088b8 Suppress more self-assign-overloaded warnings found by clang
fa5455854 UnitTestArrayPortalValueReference doesn't warn when compiled with appleclang
5cc0d03f6 Merge branch 'upstream-diy' into clang_warnings
dbd3781d5 diy 2019-04-09 (f7a68da4)
5c2f2ebce suppress warnings found by Wself-assign-overloaded
77426f044 Correct casting long to long long warning from clang.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1635
2019-04-09 15:54:57 -04:00
Robert Maynard
77426f0447 Correct casting long to long long warning from clang. 2019-04-09 11:42:45 -04:00
Sujin Philip
e7b26f5c88 Merge topic 'bugfixes-ArrayHandleVirtual'
dae779b9f ArrayHandleVirtual bugfixes

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1632
2019-04-09 08:36:12 -04:00
Sujin Philip
2bbf501c53 Fix a bug in MakeTestDataset
In Make3DExplicitDataSetZoo, only 25 cells are added, but the variable `nCells`
is set to 27.
2019-04-08 16:41:56 -04:00
Sujin Philip
dae779b9f8 ArrayHandleVirtual bugfixes
After the change to `ArrayHandleVirtual` where it became a subclass of
`vtkm::cont::ArrayHandle`, a few extra changes are required.

1. Functions with `ArrayHandleVirtual` as parameters will not be callable
with the superclass `ArrayHandle`. This is fixed by changing the argument
types to the superclass.
2. Add Serialization classes specializations for the superclass, as "is-a"
relation is not considered for class template parameters.
2019-04-08 15:42:53 -04:00
Robert Maynard
107edaff75 Merge topic 'move_device_adapter_tag_to_vtkm_cont'
1d20ae4f7 Move DeviceAdapterTag to vtkm/cont

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1624
2019-04-05 08:03:53 -04:00
Robert Maynard
30aedf287f Refactor the design of CellLocator::PrepareForExecution
The try execute functor now doesn't need to be a member of the
class. This helps with the separation of concerns.
2019-04-04 13:17:49 -04:00
Robert Maynard
1d20ae4f7b Move DeviceAdapterTag to vtkm/cont 2019-04-04 11:58:51 -04:00
Robert Maynard
6306ca66ce Merge topic 'refactor_cast_and_call_location'
72cb6343b Move vtkm::cont::CastAndCall into a header in vtkm/cont

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1622
2019-04-04 10:05:22 -04:00
Robert Maynard
96cb87c50a Merge topic 'make_cellset_api_consistent'
18f3b0dcc Document all the free functions for VariantArrayHandle
5180d6a73 DynamicCellSet has the same free function support as VariantArrayHandle
8f545662d CellSet uses NewInstance to be consistent with the rest of VTK-m

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Sujin Philip <sujin.philip@kitware.com>
Merge-request: !1620
2019-04-04 09:36:05 -04:00
Robert Maynard
7f612502ac Merge topic 'remove_unneeded_cont_exec_markup'
f1056affa Move select functions to host only to remove host/device suppressions
4f2156dfa Thrust detail::aligned_reinterpret_cast doesn't warn now
f4840618c Make sure ThrustPatches is included before thrust.
b2bbd66e6 Merge branch 'upstream-taotuple' into update_taoo
4ec6fc812 taotuple 2019-04-03 (8e70fa8a)

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Allison Vacanti <allison.vacanti@kitware.com>
Merge-request: !1607
2019-04-04 09:32:04 -04:00
Robert Maynard
18f3b0dccc Document all the free functions for VariantArrayHandle 2019-04-03 18:10:31 -04:00
Robert Maynard
5180d6a733 DynamicCellSet has the same free function support as VariantArrayHandle 2019-04-03 18:10:31 -04:00
Robert Maynard
8f545662d7 CellSet uses NewInstance to be consistent with the rest of VTK-m 2019-04-03 18:10:31 -04:00
Robert Maynard
813484d9b1 Merge topic 'remove_arrayhandlevirtual_cast_and_call'
3dd4d292f Remove unneeded code from ArrayHandleVirtual

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1623
2019-04-03 16:08:20 -04:00
Sujin Philip
e408537608 Merge topic 'update-CellLocatorTwoLevelUniformGrid'
566e220ea Suppress dashboard warnings
f20d7e788 Document the changes that are part of this MR.
f78e763be Add CellLocatorGeneral
c6bead838 Rename CellLocatorTwoLevelUniformGrid to CellLocatorUniformBins
ee838b829 Stylistic changes to CellLocators to match VTK-m

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1615
2019-04-03 15:56:27 -04:00
Robert Maynard
3dd4d292f5 Remove unneeded code from ArrayHandleVirtual
The CastAndCall for ArrayHandleVirtual was always a bad idea.
The ArrayHandleVirtual is not considered a dynamic type by the
dispatch engine so it would never have tried to use this specialization.
2019-04-03 14:50:04 -04:00
Robert Maynard
72cb6343b8 Move vtkm::cont::CastAndCall into a header in vtkm/cont
Since CastAndCall is meant to be a user callable function,
we should make sure it is part of the vtkm cont headers
2019-04-03 14:15:26 -04:00
Sujin Philip
f78e763be4 Add CellLocatorGeneral
A general purpose `CellLocator` that should work with any type of dataset.
Internally, it tries to chose one of the existing cell locators that would be
optimal for the input data.

Also removes `CellLocatorHelper`.
2019-04-03 10:22:05 -04:00
Sujin Philip
c6bead8388 Rename CellLocatorTwoLevelUniformGrid to CellLocatorUniformBins
Also make it a concrete sub-class of vtkm::cont::CellLocator
Fixes issue #251
2019-04-03 10:21:56 -04:00
Robert Maynard
f4840618cf Make sure ThrustPatches is included before thrust. 2019-04-03 08:51:05 -04:00
Robert Maynard
aef087fc00 Merge topic 'remove_runtime_device_tracker_from_try_execute'
2d477fd53 Remove ability to pass a runtime device tracker to TryExecute

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1616
2019-04-02 14:43:16 -04:00
Kenneth Moreland
04254dbd25 Merge topic 'specialize-worklet-for-device'
4e34feecb Add ability to specialize worklet for device

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Sujin Philip <sujin.philip@kitware.com>
Merge-request: !1608
2019-04-02 12:08:01 -04:00
Sujin Philip
ee838b8296 Stylistic changes to CellLocators to match VTK-m 2019-04-02 11:21:12 -04:00
Robert Maynard
2d477fd531 Remove ability to pass a runtime device tracker to TryExecute
Since runtime device trackers are single instance per thread
the ability to pass them around to other functions is unneeded.
2019-04-02 10:44:30 -04:00
Robert Maynard
f350517de2 Merge topic 'less_vtkm_cont_files_bring_in_cuda_device'
18ff6681f Less vtkm_cont cxx files bring in the cuda device

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1612
2019-04-01 12:02:55 -04:00
Kenneth Moreland
4e34feecb4 Add ability to specialize worklet for device
This adds an ExecutionSignature tag named Device that passes the
DeviceAdapterTag as an argument to the worklet's operator(). This allows
worklets to specialize their code based on the device.
2019-04-01 10:01:54 -06:00
Robert Maynard
e787d52afc Merge branch 'optionparser-to-third-party' into 'master'
Wrap third party optionparser.h in vtkm/cont/internal/OptionParser.h

See merge request vtk/vtk-m!1593
2019-04-01 10:56:01 -04:00
Robert Maynard
18ff6681fb Less vtkm_cont cxx files bring in the cuda device
When you have CUDA enabled we need to make sure that all worklet
launches come from a cuda file otherwise we will generate ODR
violations.
2019-04-01 08:21:07 -04:00
Robert Maynard
b9e0e541b8 VTK-m once again uses consistent include style 2019-03-28 14:12:08 -04:00
Kenneth Moreland
7993c2b353 Merge topic 'parse-some-options-in-initialize'
31b30dbd9 Update arguments to benchmarks
b0303c96e Allow Initialize to parse only some arguments

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Allison Vacanti <allison.vacanti@kitware.com>
Merge-request: !1603
2019-03-27 12:43:58 -04:00
Allison Vacanti
68abfccd7e Merge topic 'cuda10.1'
0581b368f Fix issues with importing installed vtkm::cuda after refactor.
ed4374b05 diy 2019-03-13 (e8e68c7c)
b85dcf229 Add more vtkm_cont compilation units to device_sources.
9014de0eb Suppress new host/device warnings for cuda 10.1.
04a464cc4 Update cuda detection to create vtkm::cuda as an interface library.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1582
2019-03-27 12:12:02 -04:00
Sujin Philip
34a49234cb Merge topic 'fix-cellset-permutation'
048cbda5e Simplify CellSetPermutation PointToCell

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1599
2019-03-27 08:28:48 -04:00
Kenneth Moreland
7237c46898 Wrap third party optionparser.h in vtkm/cont/internal/OptionParser.h
Previously we just took the optionparser.h file and stuck it right in
our source code. That was problematic for a variety of reasons.

1. It incorrectly assigned our license to external code.
2. It made lots of unnecessary changes to the original source (like
reformatting).
3. It made it near impossible to track patches we make and updates to
the original software.

Instead, use the third-party system to track changes to optionparser.h
in a different repository and then pull that into ours.
2019-03-26 15:47:17 -06:00
Allison Vacanti
b85dcf2294 Add more vtkm_cont compilation units to device_sources.
These depend on DeviceAdapterTagCuda::IsEnabled being correctly
set at compile time.
2019-03-26 14:53:42 -04:00
Kenneth Moreland
b0303c96ed Allow Initialize to parse only some arguments
When a library requires reading some command line arguments through a
function like Initialize, it is typical that it will parse through
arguments it supports and then remove those arguments from argc and argv
so that the remaining arguments can be parsed by the calling program.
VTK-m's initialize did not do that, so add that functionality.
2019-03-26 12:04:18 -06:00
Sujin Philip
048cbda5e1 Simplify CellSetPermutation PointToCell
These changes are required to enable 'CellSetPermutaion' of custom cell-set
types like 'vtkmCellSetExplicit' and 'vtkmCellSetSingleType' in VTK.
2019-03-26 13:07:11 -04:00
Robert Maynard
d1a957bf5c Merge topic 'refactor_runtime_device_tracker'
838cb4337 Redesign RuntimeDeviceTracker and RuntimeDeviceInformation

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1600
2019-03-26 10:08:31 -04:00
Robert Maynard
838cb43375 Redesign RuntimeDeviceTracker and RuntimeDeviceInformation
The RuntimeDeviceTracker had grown organically to handle multiple
different roles inside VTK-m. Now that we have device tags
that can be passed around at runtime, large portions of
the RuntimeDeviceTracker API aren't needed.

Additionally the RuntimeDeviceTracker had a dependency on knowing
the names of each device, and this wasn't possible
as that information was part of its self. Now we have moved that
information into RuntimeDeviceInformation and have broken
the recursion.
2019-03-26 08:36:18 -04:00
Allison Vacanti
ad15ae1553 Merge topic 'Variant_As'
e1f5c4dd9 Modify VariantAH::AsVirtual to cast to new ValueType if needed.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1585
2019-03-25 16:39:39 -04:00
Allison Vacanti
e1f5c4dd9b Modify VariantAH::AsVirtual to cast to new ValueType if needed.
E.g:

```
    ArrayHandle<Float64> doubleArray;
    VariantArrayHandle varHandle{doubleArray};
    ArrayHandleVirtual<Float32> = varHandle.AsVirtual<Float32>();
```

If there is a loss in range and/or precision, a warning is logged. If
the ValueTypes are Vecs with mismatched widths, an ErrorBadType is thrown.
Internally, an ArrayHandleCast is used between the VariantArrayHandle's
stored array and the ArrayHandleVirtual.
2019-03-25 11:39:45 -04:00
Robert Maynard
256e0c3c11 Merge topic 'rename_to_GetRuntimeDeviceTracker'
ae11e115a RuntimeDeviceTracker: Remove `Global` from names

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1592
2019-03-24 08:17:02 -04:00
Sujin Philip
96f4a17e4f Merge topic 'improve-cellset-api'
a09bb9eca Add a new test for CellSet API
8868fb989 Improve CellSet API

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1589
2019-03-22 12:52:31 -04:00
Robert Maynard
ae11e115a0 RuntimeDeviceTracker: Remove Global from names 2019-03-22 08:53:26 -07:00
Sujin Philip
a09bb9eca3 Add a new test for CellSet API 2019-03-22 09:35:57 -04:00
Kenneth Moreland
07fe1060a0 Merge topic 'bounding-interval-hierarchy-in-vtkm-cont'
5960b8abf Suppress nvlink warnings about virtual methods not used
0af017b03 Move virtual methods of other CellLocators to vtkm_cont
e87864b0e Put CellLocatorBoundingIntervalHierarchy in vtkm_cont library

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1594
2019-03-21 13:41:06 -04:00
Kenneth Moreland
0af017b038 Move virtual methods of other CellLocators to vtkm_cont
These changes caused some warnings in clang to show up based on virtual
methods in other cell locators. Hence, the rest of the cell locators
have also had some of their code moved to vtkm_cont.
2019-03-20 17:38:50 -06:00
Kenneth Moreland
e87864b0e3 Put CellLocatorBoundingIntervalHierarchy in vtkm_cont library
All of the methods in CellLocatorBoundingIntervalHierarchy were listed in
header files. This is sometimes problematic with virtual methods. Since
everything implemented in it can just be embedded in a library, move the
code into the vtkm_cont library.
2019-03-20 17:33:08 -06:00
Robert Maynard
6cdf6cb672 Less aggressive defaults for VTK-m compared to summit.
Since we don't have per system checks currently built into
vtk-m we can't use the tuned values for Summit, as they
don't run on all our hardware.
2019-03-20 09:30:34 -07:00
Robert Maynard
3879479185 Improve VTK-m cuda scheduling based on Summit scaling study
When benchmarking the VTK-m algorithms on Summit I discovered
that our scheduling choices aren't optimal for the hardware.

This is a short term fix where we select good numbers for
Summit, and in the future make the defaults controllable
by the calling programming and/or environment variables.

Performance numbers can be found at:
  https://gitlab.kitware.com/snippets/755
2019-03-20 09:30:34 -07:00
Sujin Philip
8868fb989b Improve CellSet API
Add useful virtual functions to the vtkm::cont::CellSet base class.
2019-03-19 16:12:48 -04:00
Sujin Philip
b44d1b2d6b Merge topic 'fix-variant-warnings'
cb76f4c79 Fix VariantArrayHandle override warnings

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1588
2019-03-19 11:34:37 -04:00
Sujin Philip
40814576b6 Merge topic 'improve-point-locator'
178da6c0d Make PointLocatorUniformGrid default constructible

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1587
2019-03-19 10:43:13 -04:00
Sujin Philip
cb76f4c791 Fix VariantArrayHandle override warnings
Add override consistently to all overriden functions.
2019-03-19 08:28:08 -04:00
Sujin Philip
178da6c0dc Make PointLocatorUniformGrid default constructible
plus some style changes to match VTK-m style.
2019-03-18 16:34:49 -04:00
Sujin Philip
1d4c8f35b5 Merge topic 'fix-VariantArrayHandle'
546a1d14a VariantArrayHandle should report run time NumberOfComponents

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1586
2019-03-18 12:35:54 -04:00
Kenneth Moreland
163b694b9d Merge topic 'fix-timer-test'
92b4e054a Fix issues with timer test

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1584
2019-03-17 11:58:28 -04:00
Dave Pugmire
07273c88f2 Merge topic 'gridEval'
3868a5b30 Remove the commented out stack code.
e7066ad94 compiler errors.
de7d9cc27 fix compile errors, remove cudastack hacks.
9b9742f43 Merge branch 'no-recurse-bih' of https://gitlab.kitware.com/kmorel/vtk-m into gridEval
ab9d0fad2 Remove warning exceptions for BoundingIntervalHierarchy recursive calls
8127093a2 Add CellLocator to name of BoundingIntervalHierarchy
c008df90c Non-recursive method to find cells in BoundingIntervalHierarchyExec
c463bbec9 Add parent index to BIH tree
...

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1536
2019-03-16 22:14:10 -04:00
Sujin Philip
ceca8ab105 Merge topic 'improve-field-api'
d4e1c1825 Update existing code to use the new functions
7b072b159 Add useful Get functions to Fields and Coordinates

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1578
2019-03-15 17:51:49 -04:00
Sujin Philip
546a1d14a2 VariantArrayHandle should report run time NumberOfComponents
Query and report number of components at runtime so that it can work with
arrays of types with runtime varying number of components
Eg. ArrayHandleGroupVecVariable.
2019-03-15 16:47:32 -04:00
Dave Pugmire
3868a5b304 Remove the commented out stack code. 2019-03-15 15:14:09 -04:00
Dave Pugmire
e7066ad94b compiler errors. 2019-03-15 14:46:25 -04:00
Kenneth Moreland
92b4e054af Fix issues with timer test
The timer test would blindly wait for an expected interval each time.
However, in a busy system that might wait more than expected, this extra
wait time can accumulate. Fix the issue by monitoring how much time has
actually elapsed and only wait to the next expected point. Also add a
check to make sure that we have not waited too long (and adjust the
error message to hopefully make it more clear that the system waited
more than expected).
2019-03-15 11:50:17 -06:00
Dave Pugmire
de7d9cc27b fix compile errors, remove cudastack hacks. 2019-03-15 13:40:48 -04:00
Sujin Philip
d4e1c18254 Update existing code to use the new functions 2019-03-15 13:28:55 -04:00
Sujin Philip
7b072b1593 Add useful Get functions to Fields and Coordinates
Avoid having to call 'GetData()' to query 'NumberOfValues'/'NumberOfPoints'.
2019-03-15 13:28:55 -04:00
Dave Pugmire
9b9742f436 Merge branch 'no-recurse-bih' of https://gitlab.kitware.com/kmorel/vtk-m into gridEval 2019-03-15 13:05:39 -04:00
Kenneth Moreland
8127093a2f Add CellLocator to name of BoundingIntervalHierarchy
This will help identify the nature of this object as well as find cell
locator implementations.
2019-03-14 16:13:59 -06:00
Kenneth Moreland
c463bbec93 Add parent index to BIH tree
This will help us traverse back up the tree without a call stack (which
is causing issues on CUDA).
2019-03-14 15:52:47 -06:00
Sujin Philip
24fc4ec944 Fix ArrayHandleGroupVecVariable
Take the const portal for the offsets array for all casses.
2019-03-14 13:54:25 -04:00
Dave Pugmire
6edda87c3a Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into gridEval 2019-03-14 13:40:33 -04:00
Dave Pugmire
533f2e5eb3 Cleanup. 2019-03-14 09:39:56 -04:00
Dave Pugmire
bc10b6dbf1 Add cuda stack code to uniform/rectilinear cellLocators. 2019-03-14 08:10:39 -04:00
Dave Pugmire
26b6021530 fix compile error. 2019-03-14 07:56:45 -04:00
Dave Pugmire
b2d5d66de5 fixes for cuda stack 2019-03-13 16:41:08 -04:00
Dave Pugmire
cfd36bcd5b wrap unit test with cuda stack change. 2019-03-13 11:29:49 -04:00
Dave Pugmire
722d4262e1 extend stacksize 2019-03-13 08:17:54 -04:00
Robert Maynard
40581993a5 Merge topic 'vtkm_cont_Initialize_use_emplace_back'
daee0f696 Initialize uses emplace_back when building unparsed args

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1571
2019-03-08 15:40:46 -05:00
Robert Maynard
daee0f6967 Initialize uses emplace_back when building unparsed args 2019-03-08 13:48:48 -05:00
Kenneth Moreland
bfe06d6d18 Merge topic 'point-merge'
6aa99aec0 Add ability to remove degenerate cells in CleanGrid
5688375c9 Add point merge capabilities to CleanGrid filter

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Abhishek Yenpure <abhishek@uoregon.edu>
Merge-request: !1558
2019-03-07 20:33:36 -05:00
Dave Pugmire
25fee68e43 Fix src in cmake file error, and explicit ds creator func. 2019-03-07 14:48:26 -05:00
Robert Maynard
a6258b63cf Revert BoundingIntervalHierarchy.hxx back into existence. 2019-03-06 14:08:35 -05:00
Robert Maynard
48dc6509f8 Merge topic 'remove_usage_of_reserved_names'
8114e9e62 VTK-m now doesn't use reserved C++ identifiers

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Allison Vacanti <allison.vacanti@kitware.com>
Merge-request: !1564
2019-03-04 15:25:25 -05:00
Dave Pugmire
2eca1d7a1d Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into gridEval 2019-03-04 14:34:11 -05:00
Kenneth Moreland
0aa99df394 Merge topic 'array-virtual-not-special'
db0f5c31b Add a Transfer object for ArrayHandleVirtual
99cb10b9a Fix warnings about override keyword
0ff83e94b Properly handle conditions when VirtualStorage is null
0571c6335 Add missing allocation methods to ArrayHandleVirtual
68b2e5e65 Add move constructors to ArrayHandle subclasses
0b32831af Make ArrayHandleVirtual conform with other ArrayHandle structure

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1557
2019-03-04 14:13:19 -05:00
Kenneth Moreland
2d6a639485 Speed up the timer test
Previously, UnitTestTimer paused for 1 second each time it wanted to
test that the timer did (or didn't) record the time elapsing. This was
done 3 times per test and tested seperately on (currently) 5 devices.
The accumulated 15 seconds is not a whole lot, but it can add up when
coupled with the well over 300 other tests.

This change moves from the POSIX sleep function (which is limited to
increments of 1 second) to the updated C++ thread/chrono classes. The
amount of time to wait each time is now 0.25 seconds, which should speed
the test up by 4 times. The risk is that the shorter wait times can
throw off the results if the computer being run on is busy. If that is
the case, we can bump up the wait time (perhaps to 0.5 seconds).
2019-03-04 08:23:42 -07:00
Kenneth Moreland
db0f5c31b9 Add a Transfer object for ArrayHandleVirtual
Previously, ArrayHandleVirtual was using the default Transfer object.
This was problematic because it would copy/allocate things in the
execution environment independently from the array that it was wrapped
around. This caused several negative effects, particularly for CUDA
devices. First, if the data were already on the device (or the array is
implicit), a second copy of the data would be made. Second, the copy to
the device is likely less efficient. Third (and worst of all), the data
did not always get pulled back to the original array correctly.

This commit also contains instantiations of ArrayHandleVirtual and its
components for the most common types.
2019-03-01 15:50:16 -07:00
Kenneth Moreland
99cb10b9a9 Fix warnings about override keyword 2019-03-01 15:50:16 -07:00
Kenneth Moreland
0ff83e94bf Properly handle conditions when VirtualStorage is null
If an ArrayHandleVirtual is constructed without an underlying concrete
array handle, then the Storage<T, StorageTagVirtual> holds a
StorageVirtual pointer that is null. Generally, a null
ArrayHandleVirtual cannot do much, but its operations should still be
correct. There were a few places where the Storage would blindly try to
use its StorageVirtual pointer without checking it first. This adds some
conditions that should correct the behavior when StorageVirtual is null.
2019-03-01 15:50:16 -07:00
Kenneth Moreland
0571c6335d Add missing allocation methods to ArrayHandleVirtual 2019-03-01 15:50:16 -07:00
Kenneth Moreland
68b2e5e65c Add move constructors to ArrayHandle subclasses
There is a test to ensure that basic VTK-m classes have proper move
constructors that do not throw exceptions. Some of these are subclasses
of ArrayHandle. Add these move constructors to the
VTK_M_ARRAY_HANDLE_SUBCLASS macros so they get automatically added.
2019-03-01 15:50:16 -07:00
Kenneth Moreland
0b32831afd Make ArrayHandleVirtual conform with other ArrayHandle structure
Previously, ArrayHandleVirtual was defined as a specialization of
ArrayHandle with the virtual storage tag. This was because the storage
object was polymorphic and needed to be handled special. These changes
moved the existing storage definition to an internal class, and then
managed the pointer to that implementation class in a Storage object
that can be managed like any other storage object.

Also moved the implementation of StorageAny into the implementation of
the internal storage object.
2019-03-01 15:50:14 -07:00
Kenneth Moreland
03fc3d51ac Merge topic 'timer-init-runtime-device'
6797c6e33 Specify return type for GetTimerImpl
25f3432b1 Increase the conditions on which Timer is tested
4d9ce2488 Synchronize CUDA timer when stopping it
85265a9c8 Add const correctness to Timer
465508993 Allow resetting Timer with a new device
dd4a93952 Enable initializing Timer with a DeviceAdapterId

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Haocheng LIU <haocheng.liu@kitware.com>
Merge-request: !1562
2019-03-01 17:23:11 -05:00
Allison Vacanti
d1db4ef8b3 Clarify intent of TypeString and TypeName functions.
TypeName is used for logging, and is now TypeToString.

TypeString is used for serialization, and is now SerializableTypeString.
2019-03-01 11:47:53 -05:00
Kenneth Moreland
6797c6e336 Specify return type for GetTimerImpl
The internal function GetTimerImpl has a rather complex expression for
its return type. Prevously this was derived using declspec, but one of
the versions of Visual Studio barfed on that for some reason. So now
declare the return type explicitly.
2019-02-28 15:36:55 -07:00
Kenneth Moreland
25f3432b1a Increase the conditions on which Timer is tested
UnitTestTimer was changed to be initialized across all possible devices
and getting times across all possible devices. Also test all possible
ways to set the device in the Timer.
2019-02-28 15:08:32 -07:00
Kenneth Moreland
4d9ce24888 Synchronize CUDA timer when stopping it
Previously, when Stop was called on a Cuda timer, it would record a stop
event but it would not synchronize it at that time. Instead, the
synchronize was only called when GetElapsedTime was called. The problem
is that the time of the event is only marked when synchronize is called.
Thus, if the event completed before GetElapsedTime was called, it would
record the time from when the event acutally happened to the time when
GetElapsedTime was called as part of the elapsed time, which is
incorrect.

Fix the problem by synchronizing when Stop is called. Although this
makes the Timer more invasive, generally using the Timer can cause
synchronization to happen. This behavior is consistent with the Timer
implementation for other devices.
2019-02-28 15:08:32 -07:00
Kenneth Moreland
85265a9c84 Add const correctness to Timer
It should be possible to query a vtkm::cont::Timer without modifying it.
As such, its query functions (such as Stopped and GetElapsedTime) should
be const.
2019-02-28 15:08:16 -07:00
Robert Maynard
8114e9e627 VTK-m now doesn't use reserved C++ identifiers
Fixes #340
2019-02-28 15:08:08 -05:00
Kenneth Moreland
4655089934 Allow resetting Timer with a new device
Previously, in order to specify a device with the timer, it had to be
specified in the timer's construction or had to be specified every time
GetElapsedTime was called. The first method was inconvienient in the
case where there are multiple code paths to define the device and the
latter method was inconvienient because you would have to pass around a
device id.

Both these techniques still exist, but we have also added a new form of
Reset that allows you to change the device the timer is used on.
2019-02-27 15:38:32 -07:00
Kenneth Moreland
dd4a939525 Enable initializing Timer with a DeviceAdapterId
Previously, a vtkm::cont::Timer had to be initialized with either no
device or with a device adapter tag. However, this precluded
initializing the timer with a DeviceAdapterId, which made it difficult
to create a timer at runtime. Instead, just accept a DeviceAdapterId
(which all device adapter tags inherit from) and do runtime checks.
2019-02-27 15:36:46 -07:00
Kenneth Moreland
e9591621b3 Find threads library in external build
In certain circumstances (currently, when logging is enabled), VTK-m
libraries depend on the threading library. However, when the VTK-m
package was included from an external project, it did not automatically
find the threads package. This change makes the Threads library loaded
when the VTK-m package is found.
2019-02-27 14:03:10 -07:00
Kenneth Moreland
6aa99aec0f Add ability to remove degenerate cells in CleanGrid 2019-02-26 12:44:57 -07:00
Haocheng LIU
634f523d92 Merge benchmark executables into a device dependent shared library
VTK-m has been updated to replace old per device benchmark executables with a device
dependent shared library so that it's able to accept a device adapter at runtime through
the "--device=" argument.
2019-02-25 12:26:47 -05:00
Kenneth Moreland
1ca55ac319 Add specialized operators for ArrayPortalValueReference
The ArrayPortalValueReference is supposed to behave just like the value
it encapsulates and does so by automatically converting to the base type
when necessary. However, when it is possible to convert that to
something else, it is possible to get errors about ambiguous overloads.
To avoid these, add specialized versions of the operators to specify
which ones should be used.

Also consolidated the CUDA version of an ArrayPortalValueReference to the
standard one. The two implementations were equivalent and we would like
changes to apply to both.
2019-02-20 13:33:55 -07:00
Dave Pugmire
289e0f808e Move BoundingIntervalHierarchy to device-specific sources. 2019-02-19 10:49:31 -05:00
Dave Pugmire
314ebd3dc6 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into gridEval 2019-02-18 14:38:37 -05:00
Robert Maynard
451bff6f14 vtkmdiy: Use the new mangled VTKM_DIY_ defines 2019-02-08 14:31:34 -05:00
Robert Maynard
74acc2a7bb vtkmdiy: Support only including the serialization headers of diy 2019-02-08 11:40:59 -05:00
Robert Maynard
ad98d818ce VTK-m now doesn't clobber external DIY installations
Fixes #334
2019-02-05 13:05:14 -05:00
Haocheng LIU
0696ae135e Merge topic 'asynchronize-timer'
415252c66 Introduce asynchronous and device independent timer

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Haocheng LIU <haocheng.liu@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1530
2019-02-05 12:02:59 -05:00
Haocheng LIU
415252c662 Introduce asynchronous and device independent timer
The timer class now is asynchronous and device independent. it's using an
similiar API as vtkOpenGLRenderTimer with Start(), Stop(), Reset(), Ready(),
and GetElapsedTime() function. For convenience and backward compability, Each
Start() function call will call Reset() internally and each GetElapsedTime()
function call will call Stop() function if it hasn't been called yet for keeping
backward compatibility purpose.

Bascially it can be used in two modes:

* Create a Timer without any device info. vtkm::cont::Timer time;

  * It would enable timers for all enabled devices on the machine. Users can get a
specific elapsed time by passing a device id into the GetElapsedtime function.
If no device is provided, it would pick the maximum of all timer results - the
logic behind this decision is that if cuda is disabled, openmp, serial and tbb
roughly give the same results; if cuda is enabled it's safe to return the
maximum elapsed time since users are more interested in the device execution
time rather than the kernal launch time. The Ready function can be handy here
to query the status of the timer.

* Create a Timer with a device id. vtkm::cont::Timer time((vtkm::cont::DeviceAdapterTagCuda()));

  * It works as the old timer that times for a specific device id.
2019-02-05 12:01:56 -05:00
Robert Maynard
d0a70946b8 Simplify the DeviceAdapterRuntimeDetectorCuda to not do a kernel launch.
The kernel launch component of the runtime device adapter is fairly
pointless. If the hardware supports CUDA we should expect that
VTK-m has the correct kernel versions.

Plus in the original version if the CUDA device was being used
and the kernel launch returns cudaErrorDevicesUnavailable it
was never possible to restore CUDA support. Now what happens
is that the runtime tracker is marked as failed, but the
calling code can always go back and trying the device again.
2019-02-04 13:27:20 -05:00
Dave Pugmire
5a63b19c2b Fixes for uniform cell locator for points right on the boundary. Also added some tests for boundary points. 2019-02-01 08:43:54 -05:00
Dave Pugmire
71f000465b fix compiler warning. 2019-01-31 15:41:56 -05:00
Dave Pugmire
9974cb064a Fix source file inclusion and copyright test failures. 2019-01-31 08:57:00 -05:00
Dave Pugmire
e631419d54 Fix export for BoundingIntervalHierarchy. Remove old grid evaluators. 2019-01-30 16:42:37 -05:00
Haocheng LIU
6107f548b1 Link pthread when logging is enabled 2019-01-30 16:34:58 -05:00
Dave Pugmire
c6fb7b4341 move code to cxx file. 2019-01-30 14:05:50 -05:00
Dave Pugmire
8a1ac3a8d8 Add a single grid evaluator class for particle advection. 2019-01-30 13:47:27 -05:00
Robert Maynard
c501500e1d Install missing headers found by VTKmCheckSourceInInstall 2019-01-29 14:46:27 -05:00
Robert Maynard
5508d17c31 Merge topic 'correct_broken_install'
24e71d251 VTK-m yet again has properly installed headers.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1525
2019-01-24 14:59:41 -05:00
Robert Maynard
223a711f2b Merge topic 'ErrorBadType_IsDeviceIndependent'
80b7f8f18 ErrorBadType should be a device independent exception

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1524
2019-01-24 14:43:06 -05:00
Robert Maynard
24e71d251b VTK-m yet again has properly installed headers.
Fixes the install issues mentioned in #342
2019-01-24 14:26:40 -05:00
Allison Vacanti
4ddcfbc66d Merge topic 'openmp_task_namespace'
91a1c7e2d Fix typo in openmp and tbb task code.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1523
2019-01-24 13:19:33 -05:00
Robert Maynard
80b7f8f187 ErrorBadType should be a device independent exception 2019-01-24 13:01:03 -05:00
Allison Vacanti
91a1c7e2d0 Fix typo in openmp and tbb task code. 2019-01-24 12:02:13 -05:00
Allison Vacanti
03fc7b66d0 Add VTKM_CUDA_DEVICE_PASS preprocessing definition.
This is only set while compiling device code, and is useful
for code that needs different implementations on devices (e.g.
they call CUDA device intrinsics, etc).
2019-01-24 11:23:45 -05:00
Robert Maynard
ed34b632f3 vtkm::cont::Testing RunOnDevice requires argc,argv parameters. 2019-01-23 16:01:58 -05:00
Robert Maynard
d6f66d17a3 Testing run methods now take argc/argv to init logging/runtime device
`vtkm::cont::testing` now initializes with logging enabled and support
for device being passed on the command line, `vtkm::testing` only
enables logging.
2019-01-17 13:16:27 -06:00
Kenneth Moreland
cbf913ad7c Merge topic 'cast-variant-to-storage'
d59ce11c0 Allow VariantArrayHandle CastAndCall to cast to concrete types

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1519
2019-01-17 11:34:22 -05:00
Kenneth Moreland
d59ce11c00 Allow VariantArrayHandle CastAndCall to cast to concrete types
When you call VariantArrayHandle::CastAndCall, it now tries both basic
storage and virtual storage. You can modify the types of storages tried
by giving a type list of storage tags as the first argument.
2019-01-16 22:31:55 -06:00
Robert Maynard
4ec5bae02d Remove VTK-m TestBuild infrastructure
The purpose of the TestBuild infrastructure was to confirm that
VTK-m didn't have any lexical issues when it was a pure header
only project. As we now move to have more compiled components
the need for this form of testing is mitigated. Combined
with the issue of TestBuilds causing MSVC issues, we should
just remove this infrastructure.
2019-01-16 10:04:33 -06:00
Kenneth Moreland
b2e20bf90e Fix issues from removing field type templates
The script fixed up most of the issues. However, there were some
instances that the script was not able to pick up on. There were
also some instances that still needed a means to select types.
2019-01-11 12:23:19 -07:00
Kenneth Moreland
2e426ad547 Run the update-control-signature-tags.sh script 2019-01-11 12:23:10 -07:00
Kenneth Moreland
42f810f70e Remove type lists from ControlSignature arguments for arrays
The typelist arguments for ControlSignature tags are antiquated. Remove
them.
2019-01-11 12:15:16 -07:00
Robert Maynard
628dce822e Merge topic 'require_cmake38'
f1e1a524e Require CMake 3.8 to build VTK-m.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1514
2019-01-09 17:02:52 -05:00
Abhishek Yenpure
afd0409189 Merge topic 'code_sprint_locator_fixes'
9b56d41fe Fixing Rectilinear Grid Cell Locator
10e9d47dc Removing std::out print statement from test
34c7b57d8 Merge branch 'code_sprint_locator_fixes' of gitlab.kitware.com:ayenpure/vtk-m into code_sprint_locator_fixes
62ee1a2c8 Updates to the Cell Locators
7eb0de5b7 Merge branch 'code_sprint_locator_fixes' of gitlab.kitware.com:ayenpure/vtk-m into code_sprint_locator_fixes
866b0798d Resolving type warnings
c062f2e26 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into code_sprint_locator_fixes
797c83891 Adding default constructor and removing wrong comment
...

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1395
2019-01-09 16:23:17 -05:00
Robert Maynard
f1e1a524e9 Require CMake 3.8 to build VTK-m. 2019-01-09 16:01:22 -05:00
Robert Maynard
9bfe670e1c Merge topic 'correct_more_diy2_warnings'
f4a96cf1f Correct warning in StorageBasic logging when using 32bit ids.
281284298 Merge branch 'upstream-diy' into correct_more_diy2_warnings
3c130d166 diy 2019-01-09 (149953b0)

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1513
2019-01-09 14:21:40 -05:00
Robert Maynard
f4a96cf1fb Correct warning in StorageBasic logging when using 32bit ids. 2019-01-09 12:56:34 -05:00
Robert Maynard
d29bdb2e39 VariantArrayHandleContainer casting operations have minimal overhead.
We want to make sure that VariantArrayHandleContainer has as little
overhead when launch worklets as possible. To do so we cache
type information to make deducing the `T` type of ArrayHandles
as fast as possible.
2019-01-09 08:27:14 -05:00
Robert Maynard
831a0bf844 Merge topic 'reduce_array_handle_virtual_binary_size'
a9d092efa Optimize TransferInfo / VirtualObjectTransfer for shared memory systems

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1498
2019-01-09 08:25:18 -05:00
Robert Maynard
2e93443b10 All bit shifting in vtkm::cont::Logging happens in unsigned space 2019-01-08 09:49:15 -05:00
Robert Maynard
1ba38c59f7 Merge topic 'move_human_size_to_logging'
543255c37 Move the HumanSize function to Logging.cxx as it is only used by the logger

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1508
2019-01-07 17:42:50 -05:00
Robert Maynard
543255c374 Move the HumanSize function to Logging.cxx as it is only used by the logger 2019-01-07 16:24:49 -05:00
Robert Maynard
ce95b8f788 VTK-m now supports case-insensitive construction of devices from strings.
Previously you had to exactly match the case of a device adapter's name to
construct it, which was a source of lots of problems ( OpenMP versus OPENMP, CUDA or Cuda ).

Now `vtkm::cont::make_DeviceAdapterId` and `vtkm::cont::RuntimeDeviceTracker` support
case-insensitive device construction.
2019-01-07 08:12:25 -05:00
ayenpure
10e9d47dc3 Removing std::out print statement from test 2019-01-06 17:27:51 -08:00
ayenpure
62ee1a2c8a Updates to the Cell Locators
- Adding updates to uniform grid cell locator
  - adding OpenMP test, updating copyrights
- Adding rectilinear grid cell locator
  - adding unit tests for serial, tbb, OpenMP, and cuda
- Updating CMakeLists to honor the alphabetical ordering
2019-01-06 17:18:23 -08:00
Robert Maynard
10895f0ea5 RuntimeDeviceTracker DeepyCopy is better optimized.
The DeepCopy method is used when a ScopedGlobalRuntimeDeviceTracker
is constructed. This in turn causes the rebuilding of the device
names and states which isn't a free operation. Now we copy the already
computed information.

This was noticeable when using ArrayHandleTransform since it uses
ScopedGlobalRuntimeDeviceTracker when construction host side
portals.
2019-01-03 15:03:35 -05:00
Robert Maynard
f955103cad Merge topic 'add_more_types_to_move_constructor_test'
4e9b4c37e Verify more core vtkm types have proper move semantics.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Allison Vacanti <allison.vacanti@kitware.com>
Merge-request: !1499
2019-01-02 16:50:31 -05:00
Robert Maynard
4e9b4c37e1 Verify more core vtkm types have proper move semantics. 2019-01-02 12:46:30 -05:00
Robert Maynard
0ee5753724 VTK-m now logs whenever at runtime a device is enabled/disabled.
Previously we only logged when a user requested a device on the
command line, but that doesn't capture when code forces a device
2019-01-02 09:34:50 -05:00
Robert Maynard
a9d092efac Optimize TransferInfo / VirtualObjectTransfer for shared memory systems 2019-01-01 15:58:57 -05:00
Robert Maynard
61b1b51577 Make IsType and Cast not error at compile time when given bad types
Previously these two functions would give compile errors when asked to
compare against an Array with a different value type. This makes it easier
to write generic code that compares virtual handles.
2018-12-31 13:03:42 -05:00
Robert Maynard
718caaaeac CudaAllocator allows managed memory to be explicitly disabled 2018-12-28 11:30:29 -05:00