Commit Graph

568 Commits

Author SHA1 Message Date
Li-Ta Lo
746c98e6c8 fix merge conflict with master branch, update to control signature 2018-01-03 11:27:13 -07:00
Li-Ta Lo
2a9439ab1e Merge branch 'master' into connected_component 2018-01-02 17:59:19 -07:00
Li-Ta Lo
cf070581f3 Update UnitTestInnerJoin.cxx 2018-01-02 19:24:10 -05:00
Li-Ta Lo
6b0d73e16c Update UnitTestCellSetDualGraph.cxx 2018-01-02 19:23:32 -05:00
Li-Ta Lo
b4db862cd1 Update UnitTestCellSetConnectivity.cpp 2018-01-02 19:22:54 -05:00
Li-Ta Lo
4c2ef4f89b factor out CellSetConnectivity worklet, cleanup 2018-01-02 16:44:35 -07:00
Robert Maynard
a81919999a Merge topic 'vtkm_host_device_warnings'
93bc0198 Suppress false positive warnings about calling host device functions.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Sujin Philip <sujin.philip@kitware.com>
Merge-request: !1042
2018-01-02 14:10:54 -05:00
Robert Maynard
93bc0198fe Suppress false positive warnings about calling host device functions. 2018-01-02 10:40:49 -05:00
Sujin Philip
39dd8feeac Merge topic 'fix-ExecutionWholeArray-usage'
6b190312 Cleanup includes of ExecutionWholeArray.h
3e10b504 Replace ExecutionWholeArray with WholeArray

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1039
2018-01-02 10:32:43 -05:00
Sujin Philip
6b19031200 Cleanup includes of ExecutionWholeArray.h 2018-01-02 10:30:16 -05:00
Sujin Philip
3e10b504e6 Replace ExecutionWholeArray with WholeArray 2018-01-02 10:30:16 -05:00
Robert Maynard
24e57556e6 Merge branch 'master' into vtk-m-cmake_refactor
Includes updating to cleanup benchmark code and handle the new MPI option
2017-12-28 14:23:21 -05:00
Dave Pugmire
2537a1cf56 Worklets for cross and dot product. 2017-12-22 15:20:20 -05:00
Li-Ta Lo
2e88f4220a Connected component for triangle mesh 2017-12-22 10:31:02 -07:00
Sujin Philip
334262db16 Fix Field constructors
1. Add option to copy user supplied array in make_ArrayHandle.
2. Replace Field constructors that take user supplied arrays with make_Field.
3. Replace CoordinateSystem constructors that take user supplied arrays with
   make_CoordinateSystem.
2017-12-21 12:48:15 -05:00
Robert Maynard
a6ec3ab093 Merge topic 'enable_all_point_gradient_tests'
a73fc3fd Enable all point gradient worklet tests

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1031
2017-12-20 08:25:23 -05:00
Robert Maynard
a73fc3fd0a Enable all point gradient worklet tests 2017-12-19 16:31:47 -05:00
Dave Pugmire
c6a4e335d9 Normalize worklet (both in place, and copy). 2017-12-19 11:44:30 -05:00
Matthew Letter
fac43bd812 Merge branch 'master' into cmake_refactor 2017-11-28 13:36:02 -07:00
Sujin Philip
8c242cef91 Switch from faux to true virtuals 2017-11-06 15:25:29 -05:00
Matthew Letter
24d0e7766e Merge remote-tracking branch 'remotes/origin/master' into cmake_refactor 2017-10-31 16:57:41 -06:00
Sujin Philip
5842da4921 Remove ArrayHandle CopyInto
Fixes #170
2017-10-27 17:28:59 -04:00
Robert Maynard
56c7362258 A thought on what CMake 3.9 would mean to VTK-m. 2017-10-27 15:29:51 -04:00
Allison Vacanti
8fabece187 Use median point from cluster as representative vertex.
Also uses the recently added StableSortIndices worklet to produce the
cell map.
2017-10-10 10:28:51 -04:00
Allison Vacanti
c7bf0c95f4 Compute PointIdMap while reducing cluster ids. 2017-10-10 10:28:51 -04:00
Allison Vacanti
3f4e17e2a2 Add field mapping to VertexClustering. 2017-10-10 10:28:51 -04:00
Kenneth Moreland
e149dcf1c1 Specify device adapter for array copy in worklet tests
Rob noticed a degridation in performance in some worklet tests when
ArrayCopy was added. I hypothesize that this slowdown is doing the array
copy with TBB instead of serial in the serial tests. (There have been
some checks in the existing code to suggest that some operations in TBB
can be slower than serial.) This change forces the array copy to be on
the device for which we are testing.
2017-10-03 14:18:39 -07:00
Kenneth Moreland
2625ae7866 Update VTK-m source to use new ArrayCopy functionality 2017-09-25 16:54:46 -06:00
Robert Maynard
311618a15f Enable highest level of warnings(W4) under MSVC
This will make VTK-m warning level match the one used by VTK. This commit
also resolves the first round of warnings that W4 exposes.
2017-09-22 13:04:28 -04:00
Kenneth Moreland
c3a3184d51 Update copyright for Sandia
Sandia National Laboratories recently changed management from the
Sandia Corporation to the National Technology & Engineering Solutions
of Sandia, LLC (NTESS). The copyright statements need to be updated
accordingly.
2017-09-20 15:33:44 -06:00
Li-Ta Lo
00008f1106 fixed correctness bug introduced previously 2017-09-19 13:30:07 -06:00
Li-Ta Lo
1eaaf342ef Merge branch 'master' into kdtree_docs 2017-09-18 13:19:55 -06:00
Li-Ta Lo
1d4b43b540 Add documentation
Add doxygen documentations for public interface of KD-Tree construction and search.
Also fixed several const-correctness issues.
2017-09-18 13:16:37 -06:00
Li-Ta Lo
de5f9d1c97 Merge topic 'NDHistogram'
bc1096d8 Update new interface to NDHistogram, NDEntropy worklet and filter
317cff0d Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into NDHistogram
fd30187d Add 'N-dimensional histogram, histogram marginalization and entropy calculation worklets and filters'

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !847
2017-09-14 10:42:30 -04:00
Patricia Fasel
2052f40719 Merge topic 'cosmo-tools'
e9f9a3d8 remove setting of DeveiceAdapter from cosmotools worklet
cdf84ccb Add sample input
6ca2683f Remove the data file for examples
f3766449 Cosmology halo finder

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !919
2017-09-13 15:30:38 -04:00
Li-Ta Lo
e9f9a3d89f remove setting of DeveiceAdapter from cosmotools worklet 2017-09-12 13:47:11 -06:00
Dave Pugmire
e5843882d9 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into streamline_returntype 2017-09-08 14:38:11 -04:00
Patricia Kroll Fasel - 090207
f3766449f2 Cosmology halo finder
Running friend of friends algorithm and then NxN most bound particle
after to find halo center. Cosmology center finder running NxN MBP
algorithm followed by a estimator reducing the problem to MxN MBP
to speed up run.
2017-09-06 11:43:40 -06:00
caseywang777
317cff0dd8 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into NDHistogram 2017-09-02 19:13:04 -04:00
caseywang777
fd30187d53 Add 'N-dimensional histogram, histogram marginalization and entropy calculation worklets and filters' 2017-09-02 18:35:21 -04:00
Dave Pugmire
400981815f Remove warnings. 2017-08-29 09:58:25 -04:00
Dave Pugmire
b2de8045cb Cleanup. Add some additional tests for streamlines. 2017-08-29 08:35:29 -04:00
Dave Pugmire
7e69b9606d Fix merges with master. 2017-08-28 16:58:44 -04:00
Dave Pugmire
1c0f721b96 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into streamline_returntype 2017-08-28 15:27:04 -04:00
Kenneth Moreland
3471dc27fe Expand usage of AverageByKey
The AverageByKey.h header file had a single function that used the
device adapter algorithm ReduceByKey method to do a simple averaging of
a field. I added a second method that can do an average when given a
vtkm::worklet::Keys object. I expect this to be a common use case as we
implement transforming fields from input to output in many algorithms.
2017-08-24 17:20:21 -06:00
Kenneth Moreland
8312fe54ab Merge topic 'cononical-face-edge-ids'
1d5a4d47 Update ExternalFaces worklet to use hashes
fc7b90ac Add hash function
b1e6c1e3 Add method for getting a cononical edge id
8e72dc73 Add method for getting a cononical face id

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !900
2017-08-24 19:00:21 -04:00
Robert Maynard
ce80383238 Adds WorkletPointNeighborhood and DispatcherPointNeighborhood types.
VTK-m is now able to run algorithms on structured points that require the
local point neighbors in a highly efficient manner.
2017-08-23 16:42:00 -04:00
Kenneth Moreland
8e72dc738a Add method for getting a cononical face id
The cononical face id is stored in a vtkm::Id3 (independent of the
actual number of points in the face).
2017-08-17 15:48:47 -06:00
Sujin Philip
2141435a19 Refactor KDTree3D worklet 2017-08-17 15:25:08 -04:00
ayenpure
2c662457f0 Fix particle advection compile warnings 2017-08-10 22:19:50 -04:00
ayenpure
84f9ec47ee Fix particle advection build warning
-adding code to resolve build warnings for gcc 5+
-change the return object of steps in unit test
2017-08-10 21:32:42 -04:00
Dave Pugmire
b23564a526 Merge branch 'master' of https://gitlab.kitware.com/vtk/vtk-m into pics_unittests 2017-08-10 16:18:18 -04:00
Abhishek Yenpure
e4116edab8 particle advection tests for rectilinear grid
-added tests for rectilinear grid
-fixing rectilinear grid evaluator for GPUs
2017-08-10 15:14:42 -04:00
Abhishek Yenpure
a3b4ad8b1a particle advection test fixes
-fixes for testing particle advection on the GPU.
-minor fixes for GPU
2017-08-10 13:39:47 -04:00
Thomas Otahal
89b2700298 Merge topic 'external-faces-production'
75517554 Move check for cell variables to it gets executed.
147247e8 Code formatting changes and compiler warning fixes.
a3fd135b Fix errors and warnings on Mac and Windows
347af497 Poly Data for External Faces
aeed7a07 Cell variables for External Faces
ad13e9b4 Merge branch 'master' into external-faces-production
ab25c160 External Faces Uniform and Rectilear grids

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !860
2017-08-09 16:00:01 -04:00
ayenpure
bc259e1523 Particle advection grid evaluators testing fix 2017-08-08 23:03:08 -04:00
Yenpure
9714ea36fa Particle advection test fix
-Added a worklet to execute evaluator test on device
-Fixing various compile issues
2017-08-08 16:19:02 -04:00
Robert Maynard
07cd0f0516 All scatters VisitIndex now are zero based.
Fixes #166
2017-08-08 09:38:04 -04:00
Yenpure
0daeee70ec Fix Needed : virtual like methods for Integrators 2017-08-03 16:55:44 -04:00
Yenpure
2ba83cd101 particle advection refactoring
-removing the bounds object form integrators.
-some formatting changes
-changes to build successfully
2017-08-03 13:34:58 -04:00
Thomas J. Otahal
347af49722 Poly Data for External Faces
The external faces filter and worklet now pass input
PolyData (0D, 1D, and 2D) cells to the output. The external
faces filter has a flag to control this output (PassPolyData).
Added tests to the external faces filter and worklet.
2017-08-03 09:19:22 -06:00
Allison Vacanti
75590f1fc9 MSVC2013 lacks support for function type aliases.
Alas, VS 2013 will keep us from using "using" to declare function
signatures. Reverting to typedef until we bump our MSVC requirement.

This appears to be a compiler bug:
https://stackoverflow.com/questions/26349216
2017-08-02 12:02:25 -04:00
Yenpure
3668e098e3 Fixed particle advection build issues
-Merged short steps changes from AYenpure's branch
-Fixed build issues
-Fixedf merge issues
2017-08-02 10:02:21 -04:00
Yenpure
4b7bba836b Merge branch 'refactor_integrators' of https://gitlab.kitware.com/ayenpure/vtk-m into pics_unittests 2017-08-01 22:00:07 -04:00
Dave Pugmire
33ada346ae Add more unittests. Put field into evaluator. 2017-08-01 16:27:03 -04:00
Yenpure
61c61ee93b Adding a base class for Integrators 2017-07-31 15:46:13 -04:00
Kenneth Moreland
897ec9ff5e Test and fix issues with WholeCellSetIn with structured grids 2017-07-28 15:02:05 -06:00
Kenneth Moreland
03b6f62d05 Add a test for the WholeCellSetIn argument
All types of cell sets should have a consistent interface. This is
tested (and fixed) for explicit and permutation cell sets. However, an
unfixed bug that has been identified is that permutation cell sets only
work for point to cell topologies. All others are not supported
correctly.
2017-07-28 13:46:37 -06:00
Dave Pugmire
6a480bad65 Fix compiler warnings. Add ArrayHandle method for getting cell id 2017-07-27 10:10:43 -04:00
ayenpure
c564c4b911 Enhancements for particle advection
-support for short steps to push the particle out of bounds
2017-07-25 23:30:17 -04:00
Dave Pugmire
45c82f2e93 First take at getting streamline worklet to return useful information.
More changes to come.
2017-07-21 14:37:20 -04:00
Dave Pugmire
d768d3130c Merge branch 'PICS_returntype' of gitlab.kitware.com:dpugmire/vtk-m into PICS_returntype 2017-07-20 07:41:11 -04:00
Dave Pugmire
8bdf42f31c Change return type to a struct that contains the arrays from the worklet. 2017-07-20 07:36:57 -04:00
Dave Pugmire
d2bc02e69e Return a vtkm::cont::DataSet from ParticleAdvection worklet. 2017-07-18 16:54:17 -04:00
Abhishek
58a08287bb Merge topic 'PICS'
8e500a17 Moving PortalType templetization to Step method of Integrators
33150365 Validate the data format for the UniformGridEvaluate.
69c1f946 Merge branch 'PICS' of gitlab.kitware.com:dpugmire/vtk-m into PICS
b87e8881 Merge branch 'PICS' of gitlab.kitware.com:dpugmire/vtk-m into PICS
5a652f41 Fix for MSVC compile isses
50dbd634 Remove unneeded template from grid eval glasses.
6f1e9b40 Fix compile warning.
32a0be8b Fix compile warnings/errors from CDash.
...

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !828
2017-07-13 09:41:33 -04:00
Yenpure
8e500a172a Moving PortalType templetization to Step method of Integrators
Changes suggested by Rob.
2017-07-12 15:31:16 -04:00
Dave Pugmire
33150365eb Validate the data format for the UniformGridEvaluate. 2017-07-12 12:02:04 -05:00
Yenpure
5a652f41bc Fix for MSVC compile isses
MSVC does not allow typename for non templated types while
compiling with c++98 std. (clang/gcc allow it)
Don't know about which standards Kitware uses to test builds, but
this should fix it.
Also removing unused parameter from the particle advection example.
2017-07-12 10:52:39 -04:00
Dave Pugmire
50dbd6347a Remove unneeded template from grid eval glasses. 2017-07-12 08:38:32 -05:00
Dave Pugmire
6f1e9b40a3 Fix compile warning. 2017-07-12 00:39:40 -05:00
Dave Pugmire
32a0be8bc7 Fix compile warnings/errors from CDash. 2017-07-11 23:33:29 -05:00
Dave Pugmire
4574f36dec Cleanup of particle advection worklets
Created ParticleAdvection.h for worklets that match the worklet pattern.
Slight reorganization of existing code to match this pattern.
Added a unittest particle advection.
2017-07-11 21:22:28 -05:00
Li-Ta Lo
5bf0bfe11a Merge topic 'kdtree'
37ded1cf Resolve code review issues, 1. cudaDeviceSetLimit issue, 2. Namespace issue
bf11195d Resolve the code review issues
75c794f6 Add 3D kd tree reconstruction and nearest neighbor searh

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !797
2017-07-11 11:40:39 -04:00
caseywang777
37ded1cf69 Resolve code review issues, 1. cudaDeviceSetLimit issue, 2. Namespace issue 2017-07-10 10:52:47 -06:00
David C. Lonie
fb2d36be1e Refactor VecRectilinearPointCoordinates.
See #163.
2017-07-07 13:49:35 -04:00
Robert Maynard
5de351124a Allow Gradient to output in FORTRAN ordering.
VTK expects that the tensor fields generated by the gradient of a vector field
to have FORTRAN ordering instead of C ordering.

Discovering this actually uncovered bugs in the Vorticity and QCriterion
implementation where they presumed FORTRAN ordering, and would generate
incorrect results.
2017-07-05 16:32:31 -04:00
Robert Maynard
8d04796b1f Allow Vector Gradient computation to output fancy fields and not gradient
Basically we can run the gradient worklet and compute the Divergence, Vorticity,
and QCriterion without ever having to store the gradient tensor in global memory
2017-07-03 16:11:01 -04:00
Robert Maynard
85a62423bd Gradient now has a Run method, and requires ArrayHandle type to be known
The gradient worklet is now templated on the input value type. This simplifies
the logic of the gradient. Secondly we have added a Run method for the
first step of making gradient a 'fatter' worklet that can handle generation
of vorticity, Divergence, and QCriterion.
2017-07-03 16:11:01 -04:00
Sujin Philip
67a95ee19a Merge topic 'fix-marchingcubes-normals'
08fb95d5 Options to compute fast normals in MarchingCubes
74f1a0bf Fix Marching Cubes normals
42ce2dcb Add ScatterPermutation

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !811
2017-06-21 09:39:08 -04:00
David Lonie
462033699f Merge topic '157-threshold_field_refactor'
1cc855ab Refactor the Threshold worklet field mapping.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !808
2017-06-21 09:12:10 -04:00
David C. Lonie
1cc855abec Refactor the Threshold worklet field mapping.
Refs #157.
2017-06-21 09:09:46 -04:00
David Lonie
8c0d1d12d0 Merge topic '157-extract_geometry_refactor'
769c3c40 Extract geometry celldata refactor.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !803
2017-06-20 16:18:06 -04:00
Sujin Philip
42ce2dcb39 Add ScatterPermutation 2017-06-20 13:41:02 -04:00
David C. Lonie
769c3c405e Extract geometry celldata refactor.
References #157.
2017-06-16 14:34:26 -04:00
caseywang777
75c794f6c0 Add 3D kd tree reconstruction and nearest neighbor searh 2017-06-15 17:55:30 -06:00
David C. Lonie
63aecfa501 Refactor field processing for Mask worklet/filter. 2017-06-15 13:17:52 -04:00
David C. Lonie
20eed197c1 Refactor the clip filters/worklet (See #157). 2017-06-13 10:24:07 -04:00
Sujin Philip
75f0957f8c Merge topic 'add-SmoothSurfaceNormals'
18d0f3e1 Add SmoothSurfaceNormals worklet

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !798
2017-06-12 17:21:45 -04:00
Sujin Philip
18d0f3e143 Add SmoothSurfaceNormals worklet
Also updates SurfaceNormals filter to produce smooth normals.
2017-06-12 16:50:22 -04:00
David Lonie
8c64247707 Merge topic 'marching_cubes_celldata'
c9f38480 Release CellIdMap if no cell fields exist in MC filter.
44c1d4f6 Remove unused variable.
82ebdd5b Add MarchingCubes::ProcessCellField.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !793
2017-06-09 09:50:47 -04:00