ec34cb56c4
Also fix deadlocks that occur when portals are not destroyed in time.
280 lines
9.3 KiB
C++
280 lines
9.3 KiB
C++
//============================================================================
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// Copyright (c) Kitware, Inc.
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// All rights reserved.
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// See LICENSE.txt for details.
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//
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// This software is distributed WITHOUT ANY WARRANTY; without even
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// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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// PURPOSE. See the above copyright notice for more information.
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//============================================================================
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// Copyright (c) 2018, The Regents of the University of California, through
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// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
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// from the U.S. Dept. of Energy). All rights reserved.
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//
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// Redistribution and use in source and binary forms, with or without modification,
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// are permitted provided that the following conditions are met:
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//
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// (1) Redistributions of source code must retain the above copyright notice, this
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// list of conditions and the following disclaimer.
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//
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// (2) Redistributions in binary form must reproduce the above copyright notice,
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// this list of conditions and the following disclaimer in the documentation
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// and/or other materials provided with the distribution.
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//
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// (3) Neither the name of the University of California, Lawrence Berkeley National
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// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
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// used to endorse or promote products derived from this software without
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// specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
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// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
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// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
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// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
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// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
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// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
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// OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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//=============================================================================
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//
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// This code is an extension of the algorithm presented in the paper:
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// Parallel Peak Pruning for Scalable SMP Contour Tree Computation.
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// Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
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// Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
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// (LDAV), October 2016, Baltimore, Maryland.
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//
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// The PPP2 algorithm and software were jointly developed by
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// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
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// Oliver Ruebel (LBNL)
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//==============================================================================
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// include guard
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#ifndef vtk_m_worklet_contourtree_augmented_print_vectors_h
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#define vtk_m_worklet_contourtree_augmented_print_vectors_h
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// global libraries
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#include <iomanip>
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#include <iostream>
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#include <string>
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#include <vtkm/Pair.h>
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#include <vtkm/cont/ArrayHandle.h>
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#include <vtkm/cont/ArrayHandlePermutation.h>
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#include <vtkm/cont/ArrayHandleTransform.h>
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#include <vtkm/cont/DeviceAdapterAlgorithm.h>
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// local includes
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#include <vtkm/cont/arg/Transport.h>
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#include <vtkm/worklet/contourtree_augmented/Types.h>
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namespace vtkm
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{
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namespace worklet
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{
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namespace contourtree_augmented
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{
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// local constants to allow changing the spacing as needed
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constexpr int PRINT_WIDTH = 12;
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constexpr int PREFIX_WIDTH = 24;
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template <typename T, typename StorageType>
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void PrintValues(std::string label,
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const vtkm::cont::ArrayHandle<T, StorageType>& dVec,
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vtkm::Id nValues = -1);
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void PrintIndices(std::string label,
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const vtkm::cont::ArrayHandle<vtkm::Id>& iVec,
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vtkm::Id nIndices = -1);
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template <typename T, typename StorageType>
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void PrintSortedValues(std::string label,
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const vtkm::cont::ArrayHandle<T, StorageType>& dVec,
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IdArrayType& sortVec,
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vtkm::Id nValues = -1);
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// base routines for printing label & prefix bars
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inline void PrintLabel(std::string label)
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{ // PrintLabel()
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// print out the front end
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std::cout << std::setw(PREFIX_WIDTH) << std::left << label;
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// print out the vertical line
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std::cout << std::right << "|";
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} // PrintLabel()
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inline void PrintSeparatingBar(vtkm::Id howMany)
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{ // PrintSeparatingBar()
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// print out the front end
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std::cout << std::setw(PREFIX_WIDTH) << std::setfill('-') << "";
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// now the + at the vertical line
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std::cout << "+";
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// now print out the tail end - fixed number of spaces per entry
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for (vtkm::Id block = 0; block < howMany; block++)
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{
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std::cout << std::setw(PRINT_WIDTH) << std::setfill('-') << "";
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}
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// now the std::endl, resetting the fill character
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std::cout << std::setfill(' ') << std::endl;
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} // PrintSeparatingBar()
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// routine to print out a single value
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template <typename T>
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inline void PrintDataType(T value)
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{ // PrintDataType
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std::cout << std::setw(PRINT_WIDTH) << value;
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} // PrintDataType
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// routine to print out a single index
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inline void PrintIndexType(vtkm::Id index)
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{ // PrintIndexType
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std::cout << std::setw(PRINT_WIDTH - 6) << MaskedIndex(index) << " " << FlagString(index);
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} // PrintIndexType
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// header line
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inline void PrintHeader(vtkm::Id howMany)
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{ // PrintHeader()
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// print out a separating bar
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PrintSeparatingBar(howMany);
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// print out a label
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PrintLabel("ID");
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// print out the ID numbers
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for (vtkm::Id entry = 0; entry < howMany; entry++)
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{
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PrintIndexType(entry);
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}
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// and an std::endl
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std::cout << std::endl;
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// print out another separating bar
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PrintSeparatingBar(howMany);
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} // PrintHeader()
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// base routines for reading & writing host vectors
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template <typename T, typename StorageType>
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inline void PrintValues(std::string label,
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const vtkm::cont::ArrayHandle<T, StorageType>& dVec,
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vtkm::Id nValues)
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{ // PrintValues()
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// -1 means full size
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if (nValues == -1)
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{
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nValues = dVec.GetNumberOfValues();
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}
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// print the label
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PrintLabel(label);
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// now print the data
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auto portal = dVec.ReadPortal();
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for (vtkm::Id entry = 0; entry < nValues; entry++)
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{
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PrintDataType(portal.Get(entry));
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}
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// and an std::endl
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std::cout << std::endl;
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} // PrintValues()
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// base routines for reading & writing host vectors
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template <typename T, typename StorageType>
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inline void PrintSortedValues(std::string label,
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const vtkm::cont::ArrayHandle<T, StorageType>& dVec,
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IdArrayType& sortVec,
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vtkm::Id nValues)
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{ // PrintSortedValues()
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// -1 means full size
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if (nValues == -1)
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{
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nValues = sortVec.GetNumberOfValues();
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}
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// print the label
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PrintLabel(label);
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// now print the data
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auto dportal = dVec.ReadPortal();
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auto sortPortal = sortVec.ReadPortal();
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for (vtkm::Id entry = 0; entry < nValues; entry++)
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{
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PrintDataType(dportal.Get(sortPortal.Get(entry)));
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}
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// and an std::endl
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std::cout << std::endl;
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} // PrintSortedValues()
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// routine for printing index arrays
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inline void PrintIndices(std::string label,
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const vtkm::cont::ArrayHandle<vtkm::Id>& iVec,
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vtkm::Id nIndices)
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{ // PrintIndices()
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// -1 means full size
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if (nIndices == -1)
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{
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nIndices = iVec.GetNumberOfValues();
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}
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// print the label
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PrintLabel(label);
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auto portal = iVec.ReadPortal();
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for (vtkm::Id entry = 0; entry < nIndices; entry++)
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PrintIndexType(portal.Get(entry));
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// and the std::endl
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std::cout << std::endl;
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} // PrintIndices()
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template <typename T, typename StorageType>
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inline void PrintLabelledDataBlock(std::string label,
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const vtkm::cont::ArrayHandle<T, StorageType>& dVec,
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vtkm::Id nColumns)
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{ // PrintLabelledDataBlock()
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// start with a header
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PrintHeader(nColumns);
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// loop control variable
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vtkm::Id entry = 0;
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// per row
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auto portal = dVec.ReadPortal();
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for (vtkm::Id row = 0; entry < portal.GetNumberOfValues(); row++)
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{ // per row
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PrintLabel(label + "[" + std::to_string(row) + "]");
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// now print the data
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for (vtkm::Id col = 0; col < nColumns; col++, entry++)
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{
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PrintDataType(portal.Get(entry));
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}
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std::cout << std::endl;
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} // per row
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// and a final std::endl
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std::cout << std::endl;
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} // PrintLabelledDataBlock()
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// routine for printing list of edge pairs. Used, e.g., to print the sorted list of saddle peaks from the ContourTree
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inline void PrintEdgePairArray(const EdgePairArray& edgePairArray)
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{ // PrintEdgePairArray()
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// now print them out
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auto edgePairArrayConstPortal = edgePairArray.ReadPortal();
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for (vtkm::Id superarc = 0; superarc < edgePairArray.GetNumberOfValues(); superarc++)
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{ // per superarc
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std::cout << std::right << std::setw(PRINT_WIDTH)
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<< edgePairArrayConstPortal.Get(superarc).first << " ";
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std::cout << std::right << std::setw(PRINT_WIDTH)
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<< edgePairArrayConstPortal.Get(superarc).second << std::endl;
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} // per superarc
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} // PrintEdgePairArray()
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} // namespace contourtree_augmented
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} // worklet
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} // vtkm
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// tail of include guard
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#endif
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