vtk-m2/vtkm/worklet/contourtree_distributed/bract_maker/ContourTreeNodeHyperArcComparator.h
Oliver Ruebel 66c96a983f Add BRACT for distributed contour tree computation
This merge request is Phase 1 of several to implement the distributed parallel
contour tree in VTKm. This merge requests adds the base outline for the
algorithm. The implementation of the details of the algorithm in the
BoundaryRestrictedAugmentedContourTree.h is currently still missing.
However, these will require a substantial (~3000) lines of additional code.
The goal is to stage the integration process across merge requests to make
the review process simpler.
2020-06-12 11:50:01 -06:00

167 lines
6.6 KiB
C++

//============================================================================
// Copyright (c) Kitware, Inc.
// All rights reserved.
// See LICENSE.txt for details.
//
// This software is distributed WITHOUT ANY WARRANTY; without even
// the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
// PURPOSE. See the above copyright notice for more information.
//============================================================================
// Copyright (c) 2018, The Regents of the University of California, through
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
// from the U.S. Dept. of Energy). All rights reserved.
//
// Redistribution and use in source and binary forms, with or without modification,
// are permitted provided that the following conditions are met:
//
// (1) Redistributions of source code must retain the above copyright notice, this
// list of conditions and the following disclaimer.
//
// (2) Redistributions in binary form must reproduce the above copyright notice,
// this list of conditions and the following disclaimer in the documentation
// and/or other materials provided with the distribution.
//
// (3) Neither the name of the University of California, Lawrence Berkeley National
// Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
// used to endorse or promote products derived from this software without
// specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
// IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
// INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
// OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
// OF THE POSSIBILITY OF SUCH DAMAGE.
//
//=============================================================================
//
// This code is an extension of the algorithm presented in the paper:
// Parallel Peak Pruning for Scalable SMP Contour Tree Computation.
// Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
// Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
// (LDAV), October 2016, Baltimore, Maryland.
//
// The PPP2 algorithm and software were jointly developed by
// Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
// Oliver Ruebel (LBNL)
//==============================================================================
#ifndef vtk_m_worklet_contourtree_distributed_bract_maker_contourtree_node_hyperarc_comperator_h
#define vtk_m_worklet_contourtree_distributed_bract_maker_contourtree_node_hyperarc_comperator_h
#include <vtkm/cont/ArrayHandle.h>
#include <vtkm/cont/ExecutionObjectBase.h>
#include <vtkm/worklet/contourtree_augmented/Types.h>
namespace ctaug = vtkm::worklet::contourtree_augmented;
namespace vtkm
{
namespace worklet
{
namespace contourtree_distributed
{
namespace bract_maker
{
// device implementation of the ContourTreeNodeHyperArcComparator
template <typename DeviceAdapter>
class ContourTreeNodeHyperArcComparatorImpl
{
public:
using IdArrayPortalType =
typename vtkm::cont::ArrayHandle<vtkm::Id>::template ExecutionTypes<DeviceAdapter>::PortalConst;
// constructor - takes vectors as parameters
VTKM_CONT
ContourTreeNodeHyperArcComparatorImpl(const IdArrayPortalType& superarcsPortal,
const IdArrayPortalType& superparentsPortal)
: SuperarcsPortal(superarcsPortal)
, SuperparentsPortal(superparentsPortal)
{ // constructor
} // constructor
// () operator - gets called to do comparison
VTKM_EXEC
bool operator()(const vtkm::Id& i, const vtkm::Id& j) const
{ // operator()
// retrieve the left & right superparents
vtkm::Id leftSuperparent = this->SuperparentsPortal.Get(ctaug::MaskedIndex(i));
vtkm::Id rightSuperparent = this->SuperparentsPortal.Get(ctaug::MaskedIndex(j));
// compare the superparents
if (ctaug::MaskedIndex(leftSuperparent) < ctaug::MaskedIndex(rightSuperparent))
{
return true;
}
if (ctaug::MaskedIndex(leftSuperparent) > ctaug::MaskedIndex(rightSuperparent))
{
return false;
}
// parents are equal, so retrieve superarc for ascending flag & compare indices
// TODO We masked the leftSuperparent here. Check if we need to do this or not
bool ascentFlag =
ctaug::IsAscending(this->SuperarcsPortal.Get(ctaug::MaskedIndex(leftSuperparent)));
// compare the sort indices, flipping based on ascending index from superparent
if (i < j)
{
return ascentFlag;
}
else if (i > j)
{
return !ascentFlag;
}
else
{
return false;
}
} // operator()
private:
IdArrayPortalType SuperarcsPortal;
IdArrayPortalType SuperparentsPortal;
}; // ContourTreeNodeHyperArcComparatorImpl
/// comparator to use for sorting nodes by hyperparent (i.e. amalgamates augmentation & sorting)
/// for this one, we don't care (yet) about *WHEN* they were transferred
/// The original version of this took the sortIndex array, but it turns out that it only gets used
/// on an array that already contains sortIndex, and this simplifies code elsewhere, so I have removed it
class ContourTreeNodeHyperArcComparator : public vtkm::cont::ExecutionObjectBase
{
public:
// constructor - takes vectors as parameters
VTKM_CONT
ContourTreeNodeHyperArcComparator(const ctaug::IdArrayType superarcs,
const ctaug::IdArrayType superparents)
: Superarcs(superarcs)
, Superparents(superparents)
{ // constructor
} // constructor
template <typename DeviceAdapter>
VTKM_CONT ContourTreeNodeHyperArcComparatorImpl<DeviceAdapter> PrepareForExecution(
DeviceAdapter device,
vtkm::cont::Token& token) const
{
return ContourTreeNodeHyperArcComparatorImpl<DeviceAdapter>(
this->Superarcs.PrepareForInput(device, token),
this->Superparents.PrepareForInput(device, token));
}
private:
ctaug::IdArrayType Superarcs;
ctaug::IdArrayType Superparents;
}; // ContourTreeNodeHyperArcComparator
} // namespace bract_maker
} // namespace contourtree_distributes
} // namespace worklet
} // namespace vtkm
#endif