* manual: Mark commands that require root
Mark every command that requires to be run as root by prefixing them
with '#' instead of '$'.
* manual: Add note about commands that require root
This allows setting options for the same LUKS device in different
modules. For example, the auto-generated hardware-configuration.nix
can contain
boot.initrd.luks.devices.crypted.device = "/dev/disk/...";
while configuration.nix can add
boot.initrd.luks.devices.crypted.allowDiscards = true;
Also updated the examples/docs to use /disk/disk/by-uuid instead of
/dev/sda, since we shouldn't promote the use of the latter.
