Justin Bedo
3a65e29d4b
SPAdes: add python dependency
2020-12-21 08:29:57 +11:00
Mario Rodas
7666fb25d0
Merge pull request #106856 from jbedo/delly
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delly: 0.8.5 -> 0.8.6
2020-12-14 08:10:03 -05:00
Justin Bedo
6ce06dccfc
delly: 0.8.5 -> 0.8.6
2020-12-14 09:55:57 +11:00
R. RyanTM
aa2148eb1f
picard-tools: 2.23.8 -> 2.23.9
2020-12-10 23:06:36 +00:00
Ryan Mulligan
4ce30eb63a
Merge pull request #105672 from r-ryantm/auto-update/hmmer
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hmmer: 3.3.1 -> 3.3.2
2020-12-02 05:45:57 -08:00
R. RyanTM
6f50c5b18e
hmmer: 3.3.1 -> 3.3.2
2020-12-02 09:00:15 +00:00
Ben Darwin
ee7d83e648
ants: unbreak on Darwin
2020-12-01 14:17:54 -05:00
Justin Bedo
5fc6258043
bwa: expand supported platforms
2020-11-30 09:46:51 +11:00
R. RyanTM
212ba486d6
igv: 2.8.12 -> 2.8.13
2020-11-28 02:18:00 +00:00
Sandro
c2d728f195
Merge pull request #102140 from SuperSandro2000/patch-2
2020-11-26 01:00:22 +01:00
Sandro
d8b570e6c8
Merge pull request #98363 from jbedo/mosdepth
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mosdepth: 0.2.9 -> 0.3.1
2020-11-25 23:55:47 +01:00
Sandro
e166f22759
tebreak: Fix tests
2020-11-25 21:36:38 +01:00
Sandro
5f2997686c
deeptools: Fix tests
2020-11-25 21:36:37 +01:00
R. RyanTM
3b17793827
star: 2.7.5c -> 2.7.6a
2020-11-23 20:40:05 +01:00
Ryan Mulligan
80b6df2a17
Merge pull request #103525 from r-ryantm/auto-update/samblaster
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samblaster: 0.1.24 -> 0.1.26
2020-11-16 19:03:03 -08:00
Ryan Mulligan
47fe890182
Merge pull request #103751 from r-ryantm/auto-update/last
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last: 1133 -> 1145
2020-11-14 15:08:46 -08:00
R. RyanTM
a698dfa0a2
last: 1133 -> 1145
2020-11-13 23:30:53 +00:00
R. RyanTM
82d1113013
igv: 2.8.11 -> 2.8.12
2020-11-13 18:25:51 +00:00
R. RyanTM
d1baaef83d
samblaster: 0.1.24 -> 0.1.26
2020-11-12 01:43:02 +00:00
Ryan Mulligan
ba3fc8bf47
Merge pull request #102707 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.23.4 -> 2.23.8
2020-11-04 06:11:08 -08:00
R. RyanTM
6391d3c1b5
picard-tools: 2.23.4 -> 2.23.8
2020-11-04 04:53:50 +00:00
Kevin Cox
d7a0daf2a1
Merge pull request #102420 from freezeboy/remove-plink
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plink: remove (broken since 2014)
2020-11-03 07:49:09 -05:00
R. RyanTM
8ef46be2a4
igv: 2.8.9 -> 2.8.11
2020-11-02 10:16:32 +00:00
freezeboy
1f7e201e9e
plink: remove (broken since 2014)
2020-11-02 03:24:16 +01:00
Justin Bedo
32573f4b6e
last: 1066 -> 1133
2020-10-31 10:59:02 +11:00
Renato Alves
6e19ed0a52
lumpy: 0.3.0 -> 0.3.1
2020-10-30 01:28:00 +01:00
Renato Alves
a28e5b0a4f
samtools: 1.10 -> 1.11
2020-10-29 18:27:22 +01:00
Ben Siraphob
db74029e3e
treewide: remove package names from prefix of descriptions
2020-10-27 09:15:07 -07:00
Ben Siraphob
683a87dbeb
treewide: remove periods from end of package descriptions
2020-10-17 08:22:31 -07:00
Ryan Mulligan
f9728adae7
Merge pull request #99128 from jbedo/delly
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delly: 0.8.2 -> 0.8.5
2020-10-16 06:30:11 -07:00
R. RyanTM
a3dca9576b
deeptools: 3.4.1 -> 3.5.0
2020-10-16 00:42:47 -07:00
Doron Behar
1db3202722
Merge pull request #75843 from jbedo/lumpy
2020-10-15 19:46:13 +03:00
Ben Darwin
e673c285e1
conglomerate: update LIBMINC_DIR to reflect libminc CMake changes
2020-10-06 15:31:18 -04:00
Ben Darwin
44f2bf87d6
EZminc: update LIBMINC_DIR to reflect libminc CMake changes
2020-10-06 15:31:18 -04:00
Ben Darwin
83d0571ae6
mni_autoreg: update LIBMINC_DIR due to CMake changes in libminc
2020-10-06 15:31:17 -04:00
Ben Darwin
9a190786a4
n3: 2017-09-18 -> 2018-08-09
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- update LIBMINC_DIR and EBTKS_DIR due to CMake updates in those packages
2020-10-06 15:31:16 -04:00
Ben Darwin
7772e248ab
inormalize: update LIBMINC_DIR and dependencies due to libminc update
2020-10-06 15:31:16 -04:00
Ben Darwin
91a429a148
minc_tools: unstable-2019-12-04 -> unstable-2020-07-25
2020-10-06 15:31:14 -04:00
Justin Bedo
d8d8f9390a
delly: 0.8.2 -> 0.8.5
2020-10-01 18:09:53 +10:00
Justin Bedo
634927a402
mosdepth: 0.2.9 -> 0.3.1
2020-09-30 09:48:47 +10:00
Robert Scott
8db3ea1ef1
Merge pull request #98614 from r-burns/aragorn
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aragorn: fix build on darwin
2020-09-25 19:58:10 +01:00
Ryan Burns
6cc2d3e6f2
aragorn: fix build on darwin
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Use environment-specified $CC for C compiler
2020-09-23 20:45:21 -07:00
Ryan Mulligan
dfd2eeabd6
Merge pull request #69644 from bzizou/obitools
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obitools3: init at 3.0.0-beta14
2020-09-23 19:04:11 -07:00
Daniël de Kok
af5b1a9f94
Merge pull request #98427 from jbedo/octopus
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octopus-caller: 0.6.3 -> 0.7.0
2020-09-23 08:24:10 +02:00
Justin Bedo
4bbdb75f22
octopus-caller: 0.6.3 -> 0.7.0
2020-09-22 08:43:04 +10:00
Robert Scott
ecd5886830
truvari: 1.3.4 -> 2.0.2, fixing build
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seeing it has no tests, use pythonImportsCheck in an attempt to detect
total breakage, even though it's not intended to be used as an importable
module
2020-09-20 12:25:17 +01:00
Robert Scott
f1d2491057
bwa: include static library and some key headers in output
2020-09-20 12:23:18 +01:00
Robert Scott
4637721bc1
truvari: fix build
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be less strict about versions
2020-09-19 20:25:08 -07:00
Emery Hemingway
dc09e3edfc
nim: wrap compiler for cross-compilation support
2020-09-07 16:16:55 +02:00
Emery Hemingway
06ac3c1d2a
nim: patch to fix dynamic library loading
2020-09-07 16:16:55 +02:00
