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108 Commits

Author SHA1 Message Date
Timo Kaufmann
8ac53ed0b1 python.pkgs.sympy: 1.4 -> 1.5 
Sage needs some doctest changes. The patch was included upstream.
Modelled after https://trac.sagemath.org/ticket/28911.
 2019-12-26 11:46:42 +01:00
Timo Kaufmann
afb9887dbd sage: backport fix for threejs r109 2019-11-06 14:40:16 +01:00
Timo Kaufmann
da7ec1c139 sage: ignore werkzeug immutable dict deprecation 2019-11-06 14:40:13 +01:00
Timo Kaufmann
32827e35d8 sage: ignore attrs deprecation warning 
cmp is deprecated since attrs 19.2.0:
http://www.attrs.org/en/19.2.0/changelog.html

The deprecation warning breaks the doctests.  Fortunately they have a
rather long deprecation window, so we can just wait until upstream(s)
fix this.
 2019-10-30 22:27:00 +01:00
Timo Kaufmann
7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9 
sage: 8.8 -> 8.9
 2019-09-30 11:13:46 +00:00
Timo Kaufmann
d9176bee70 sage: 8.9.rc1 -> 8.9 2019-09-30 11:10:10 +02:00
R. RyanTM
faf9a73e2f eclib: 20190226 -> 20190909 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eclib/versions

Relevant sage upstream ticket: https://trac.sagemath.org/ticket/28472
 2019-09-26 16:41:50 +02:00
Timo Kaufmann
78741fc409 sage: 8.9.rc0 -> 8.9.rc1 2019-09-25 10:19:04 +02:00
Timo Kaufmann
1797c9c295 sage: 8.9.beta9 -> 8.9.rc0 
Sage now by default expects the lcalc library to be named Lfunction
(instead of libLfunction). This could be changed by an environment
variable (https://trac.sagemath.org/ticket/28224), but various distros
seem to agree on this standard
(https://groups.google.com/forum/#!topic/sage-packaging/xvh55IxHTZg) so
it's best just to follow it. The old standard was set by sage anyway and
sage is the only consumer of lcalc in nixpkgs.
 2019-09-24 17:51:09 +02:00
Timo Kaufmann
5aba3be6f9 sage: 8.9.beta8 -> 8.9.beta9 2019-09-23 18:50:59 +02:00
Timo Kaufmann
8593d468ae Merge remote-tracking branch 'upstream/master' into sage-8.9 2019-09-23 17:11:15 +02:00
Timo Kaufmann
84578046aa sage: 8.9.beta7 -> 8.9.beta8 2019-09-03 15:34:28 +02:00
Timo Kaufmann
071a4db33e sage: 8.9.beta6 -> 8.9.beta7 2019-08-19 00:16:06 +02:00
Timo Kaufmann
e8436f5e23 sage: 8.9.beta5 -> 8.9.beta6 2019-08-18 21:52:27 +02:00
Timo Kaufmann
192197dc6c
Merge pull request #65802 from timokau/sage-transient-debug 
sage: add patch to debug transient issue
 2019-08-17 00:33:05 +02:00
Timo Kaufmann
9ef44b3431 sage: move sympow cache to .sage 2019-08-09 17:45:14 +02:00
Timo Kaufmann
ddd3faf08e sage: 8.9.beta4 -> 8.9.beta5 2019-08-07 15:33:15 +02:00
Timo Kaufmann
f6a1fe64eb sage: 8.9.beta3 -> 8.9.beta4 2019-08-02 23:50:45 +02:00
Timo Kaufmann
dac4719e0b sage: add patch to debug transient issue 2019-08-02 18:09:15 +02:00
Timo Kaufmann
b884552c35 sage: 8.9.beta2 -> 8.9.beta3 2019-08-02 01:03:33 +02:00
Timo Kaufmann
56bd506e42 sage: 8.9.beta0 -> 8.9.beta2 2019-07-11 19:42:01 +02:00
Timo Kaufmann
924c321e8a sage: 8.8 -> 8.9.beta0 2019-07-02 23:02:36 +02:00
Timo Kaufmann
5b2db39c49 sage: 8.8.rc2 -> 8.8 2019-06-27 22:05:30 +02:00
Timo Kaufmann
e7d4386e0e sage: 8.8.rc1 -> 8.8.rc2 2019-06-27 22:03:00 +02:00
Timo Kaufmann
218fd843a3 sage: 8.8.rc0 -> 8.8.rc1 2019-06-27 22:03:00 +02:00
Timo Kaufmann
409bee28b6 sage: 8.8.beta7 -> 8.8.rc0 2019-06-27 22:03:00 +02:00
Timo Kaufmann
c76e8fa86e sage: 8.8.beta6 -> 8.8.beta7 2019-06-27 22:02:57 +02:00
Timo Kaufmann
9f434d7080 sage: 8.8.beta5 -> 8.8.beta6 2019-06-27 22:01:40 +02:00
Timo Kaufmann
325a5037bf sage: 8.8.beta4 -> 8.8.beta5 2019-06-27 22:01:37 +02:00
Timo Kaufmann
240d4c31d2 sage: 8.8.beta3 -> 8.8.beta4 2019-06-27 21:57:33 +02:00
Timo Kaufmann
608948e3e9 sage: 8.8.beta2 -> 8.8.beta3 2019-06-27 21:57:33 +02:00
Timo Kaufmann
21c1ab6776 sage: 8.7 -> 8.8.beta2 2019-06-27 21:57:27 +02:00
Timo Kaufmann
2d78d928cd sage: backport threejs r100 compatibility 
https://github.com/NixOS/nixpkgs/issues/62736#issuecomment-503757429
 2019-06-20 12:50:00 +02:00
Timo Kaufmann
6e74109b13
sage: fix threejs integration (#63375) 
Before this it didn't find the correct files. Unfortunately, the
interactive parts of sage are hard to test automatically.
 2019-06-18 11:50:41 +02:00
Timo Kaufmann
3814d7b14a
givaro: 4.0.4 -> 4.1.0, fflas-ffpack: 2.3.2 -> 2.4.0, linbox: 1.5.2 -> 1.6.0 (#61285) 
The three packages are interdependent and need to be updated together,
like the main contributor did for sage:

https://trac.sagemath.org/ticket/24214
 2019-05-11 16:09:07 +02:00
Timo Kaufmann
6dabc28cd0 sage: add compatibility for R 3.6.0 
The random number generator seems to have changed. Because of this, a
trivial test adjustment is needed.
 2019-04-29 13:37:07 +02:00
Timo Kaufmann
af6739fdd7 gap: 4.10.0 -> 4.10.1 2019-04-20 09:54:27 +02:00
Timo Kaufmann
49b8efcb84 sage: 8.6 -> 8.7 
https://groups.google.com/forum/#!topic/sage-release/3m8PV9JkFro
 2019-04-17 22:44:32 +02:00
Timo Kaufmann
e0e5445667 sage: fix another transient sig_on bug 
Caused a test failure on hydra, backporting upstream fix.
 2019-04-17 19:58:07 +02:00
Timo Kaufmann
62c288ec20
python.pkgs.sympy: 1.3 -> 1.4 (#59482) 2019-04-14 17:52:03 +02:00
Timo Kaufmann
ceede33ddf
python.pkgs.cypari2: 2.0.3 -> 2.1.0 (#59085) 2019-04-06 21:46:13 +00:00
Timo Kaufmann
69555825f8
eclib: 20180815 -> 20190226 (#58801) 
Needs a sage patch, see
https://trac.sagemath.org/ticket/27360.
 2019-04-02 15:39:20 +00:00
Timo Kaufmann
5fc5881221
sage: backport bugfix (#57794) 2019-03-17 14:36:01 +00:00
Timo Kaufmann
ce96994032
sage: fix docbuild (#57294) 
The docbuild (or rather its tests) failed because sphinx built some
English parts of the documentation in Russian. The added debian patch
fixes that by isolating docbuilding threads in sphinx using
proper subprocesses.
 2019-03-10 21:42:54 +00:00
Timo Kaufmann
2de81ee78f sage: patch for pip 19 
pip 19 introduced a deprecation warning for python 2.7. Since sage
internally uses pip to query for installed packages, this deprecation
warning will show up at unexpected times. That is ugly and messes with
the testsuite.

Upstream: https://trac.sagemath.org/ticket/27405
 2019-03-03 13:21:22 +01:00
Jörg Thalheim
dadc7eb329
treewide: use runtimeShell instead of stdenv.shell whenever possible 
Whenever we create scripts that are installed to $out, we must use runtimeShell
in order to get the shell that can be executed on the machine we create the
package for. This is relevant for cross-compiling. The only use case for
stdenv.shell are scripts that are executed as part of the build system.
Usages in checkPhase are borderline however to decrease the likelyhood
of people copying the wrong examples, I decided to use runtimeShell as well.
 2019-02-26 14:10:49 +00:00
Timo Kaufmann
9243e85fbc
sage: fix fetchSageDiff (#55783) 
For some reason I changed it to use `cgit`s `rawdiff` instead of `patch`
in the update to sage 8.6. Probably commited that by accident, at least
I can't remember the reason. Also changed the excludes filter, the
leading slash prevented it from working.

As a result, the cypari2 patch changed. Only didn't notice because it
was cached.

Fixes #55780
 2019-02-14 21:48:03 +01:00
Timo Kaufmann
5728028916 sage: add numpy 1.16 compatibility patch 
https://trac.sagemath.org/ticket/27000
 2019-02-11 21:43:56 +01:00
Timo Kaufmann
342333c0ab
sage: add compatibility for sphinx 1.8.3 (#55078) (#55560) 
Since https://github.com/NixOS/nixpkgs/pull/48841 was replaced by
https://github.com/NixOS/nixpkgs/pull/54186, this needs to be done
separately.

(cherry picked from commit 33db01e6d90be23a1bf65e55f0b078e2e80c2194)
 2019-02-11 13:18:16 +01:00
Timo Kaufmann
d34f44db45
sage: fix transient ecl error (#54285) 
Sometimes the doctests fail because ecl races to create a directory.
This should fix that by making sure each process has its own directory.
 2019-01-18 23:02:03 +01:00