nixpkgs/pkgs/development/python-modules/ruffus/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

49 lines
1001 B
Nix

{ gevent
, buildPythonPackage
, fetchFromGitHub
, hostname
, pytest
, python
, lib, stdenv
}:
buildPythonPackage rec {
pname = "ruffus";
version = "2.8.4";
src = fetchFromGitHub {
owner = "cgat-developers";
repo = pname;
rev = "v${version}";
sha256 = "0fnzpchwwqsy5h18fs0n90s51w25n0dx0l74j0ka6lvhjl5sxn4c";
};
propagatedBuildInputs = [ gevent ];
checkInputs = [
hostname
pytest
];
# tests very flaky & hang often on darwin
doCheck = !stdenv.isDarwin;
# test files do indeed need to be executed separately
checkPhase = ''
pushd ruffus/test
rm test_with_logger.py # spawns 500 processes
for f in test_*.py ; do
HOME=$TMPDIR pytest -v --disable-warnings $f
done
popd
'';
pythonImportsCheck = [ "ruffus" ];
meta = with lib; {
description = "Light-weight Python Computational Pipeline Management";
homepage = "http://www.ruffus.org.uk";
license = licenses.mit;
maintainers = [ maintainers.kiwi ];
};
}