| .. |
|
ants
|
|
|
|
aragorn
|
|
|
|
bayescan
|
|
|
|
bcftools
|
|
|
|
bedops
|
|
|
|
bedtools
|
|
|
|
bftools
|
|
|
|
blast
|
|
|
|
bowtie
|
|
|
|
bowtie2
|
bowtie2: 2.4.4 -> 2.4.5
|
2022-01-23 22:45:59 +00:00 |
|
bppsuite
|
|
|
|
bwa
|
|
|
|
cd-hit
|
|
|
|
clustal-omega
|
|
|
|
cmtk
|
|
|
|
conglomerate
|
|
|
|
dcm2niix
|
|
|
|
deeptools
|
deeptools: 3.5.0 -> 3.5.1
|
2022-01-21 05:36:24 +00:00 |
|
delly
|
delly: 0.8.7 -> 0.9.1
|
2021-11-25 21:19:48 +11:00 |
|
diamond
|
diamond: switch to fetchFromGitHub
|
2021-12-23 19:11:17 +01:00 |
|
ecopcr
|
|
|
|
eggnog-mapper
|
|
|
|
emboss
|
|
|
|
est-sfs
|
|
|
|
exonerate
|
|
|
|
EZminc
|
|
|
|
fastp
|
fastp: 0.23.1 -> 0.23.2
|
2021-12-02 08:03:17 +11:00 |
|
freebayes
|
|
|
|
genmap
|
genmap: init 1.3.0
|
2021-12-04 06:51:16 +11:00 |
|
hisat2
|
hisat2: update homepage
|
2022-02-06 15:10:53 +01:00 |
|
hmmer
|
hmmer: restrict platforms to x86_64
|
2021-11-20 19:17:57 +00:00 |
|
igv
|
|
|
|
inormalize
|
|
|
|
itsx
|
|
|
|
iv
|
|
|
|
kallisto
|
kallisto: 0.46.2 -> 0.48.0
|
2022-01-31 09:53:54 -08:00 |
|
kent
|
|
|
|
kssd
|
kssd: switch to fetchFromGitHub
|
2021-12-23 19:11:17 +01:00 |
|
last
|
last: 1256 -> 1260
|
2022-02-12 02:52:18 +00:00 |
|
MACS2
|
|
|
|
macse
|
|
|
|
manta
|
|
|
|
megahit
|
|
|
|
meme-suite
|
|
|
|
messer-slim
|
messer-slim: 3.7 -> 3.7.1
|
2022-02-14 00:46:29 +00:00 |
|
migrate
|
|
|
|
minc-tools
|
|
|
|
minc-widgets
|
|
|
|
minia
|
|
|
|
minimap2
|
minimap2: 2.23 -> 2.24
|
2022-01-17 08:49:35 +01:00 |
|
mni_autoreg
|
|
|
|
mosdepth
|
mosdepth: 0.3.2 -> 0.3.3
|
2022-02-12 14:31:47 +00:00 |
|
mrbayes
|
|
|
|
mrtrix
|
mrtrix: 3.0.2 -> unstable-2021-11-25
|
2021-11-30 21:03:53 -08:00 |
|
muscle
|
|
|
|
N3
|
|
|
|
ncbi-tools
|
|
|
|
neuron
|
|
|
|
niftyreg
|
|
|
|
niftyseg
|
niftyseg: switch to fetchFromGitHub
|
2021-12-23 19:11:17 +01:00 |
|
obitools
|
|
|
|
octopus
|
|
|
|
paml
|
|
|
|
picard-tools
|
picard-tools: 2.26.9 -> 2.26.10
|
2022-02-12 22:20:29 +00:00 |
|
platypus
|
|
|
|
plink-ng
|
|
|
|
poretools
|
python,pythonPackages: make aliases
|
2022-01-16 18:39:59 +00:00 |
|
prodigal
|
|
|
|
quast
|
|
|
|
raxml
|
|
|
|
repseek
|
repseek: init at 9Sep2014 (#148017)
|
2022-01-31 14:59:32 +01:00 |
|
sambamba
|
sambamba: 0.8.1 -> 0.8.2 (#155972)
|
2022-01-23 04:51:46 +01:00 |
|
samblaster
|
|
|
|
samtools
|
samtools: pull upstream fix for ncurses-6.3
|
2021-11-26 13:02:05 +00:00 |
|
seaview
|
seaview: 5.0.4 -> 5.0.5
|
2021-12-12 15:59:16 +00:00 |
|
snpeff
|
|
|
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
spades
|
SPAdes: 3.15.3 -> 3.15.4
|
2022-02-18 00:55:34 +01:00 |
|
stacks
|
stacks: 2.59 -> 2.60
|
2022-01-02 19:23:58 +01:00 |
|
star
|
star: 2.7.9a -> 2.7.10a
|
2022-01-24 19:51:44 +01:00 |
|
strelka
|
|
|
|
subread
|
subread: init 2.0.3
|
2021-12-14 13:30:23 +11:00 |
|
sumatools
|
|
|
|
svaba
|
|
|
|
tebreak
|
tebreak: also use python3 for tests
|
2022-01-16 18:00:59 +00:00 |
|
trimal
|
|
|
|
truvari
|
|
|
|
varscan
|
|
|
|
vcftools
|
|
|
|
whisper
|
|
|
|
xenomapper
|
python3Packages.xenomapper: move to top-level
|
2022-01-01 02:09:11 +01:00 |
