nixpkgs/pkgs/applications/science/biology/strelka/default.nix
2018-08-20 08:58:22 +10:00

38 lines
938 B
Nix

{stdenv, fetchFromGitHub, cmake, zlib, python2}:
stdenv.mkDerivation rec {
name = "strelka-${version}";
version = "2.9.5";
src = fetchFromGitHub {
owner = "Illumina";
repo = "strelka";
rev = "v${version}";
sha256 = "0x4a6nkx1jnyag9svghsdjz1fz6q7qx5pn77wphdfnk81f9yspf8";
};
buildInputs = [ cmake zlib python2 ];
preConfigure = ''
sed -i 's|/usr/bin/env python|${python2}/bin/python|' src/python/lib/makeRunScript.py
patchShebangs .
'';
postFixup = ''
pushd $out/lib/python/pyflow
sed -i 's|/bin/bash|${stdenv.shell}|' pyflowTaskWrapper.py
rm pyflowTaskWrapper.pyc
echo "import pyflowTaskWrapper" | python2
popd
'';
meta = with stdenv.lib; {
description = "Germline and small variant caller";
license = licenses.gpl3;
homepage = https://github.com/Illumina/strelka;
maintainers = with maintainers; [ jbedo ];
platforms = [ "x86_64-linux" ];
};
}