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nixpkgs/pkgs/applications/science/biology
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R. RyanTM b3052440f6 picard-tools: 2.18.5 -> 2.18.7 (#41975) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/siklhy9pl9xl9cq3nlqhln038554h72g-picard-tools-2.18.7/bin/picard had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.18.7 with grep in /nix/store/siklhy9pl9xl9cq3nlqhln038554h72g-picard-tools-2.18.7
- directory tree listing: https://gist.github.com/a49ed5f2ff312ce6180174183901e38f
- du listing: https://gist.github.com/243f4d89d2100ef27d332e3562d5f173
2018-06-18 22:41:49 +02:00
..
ants ants: bump version and fix sandboxed build 2017-09-20 18:42:34 -04:00
bcftools bcftools: python/perl is needed for shebangs 2018-04-08 09:35:20 +01:00
bedtools bedtools: 2.26.0 -> 2.27.1 2018-01-22 12:09:44 +00:00
bowtie2 bowtie2: 2.3.4 -> 2.3.4.1 2018-02-25 09:45:04 -08:00
bwa bwa: 0.7.16a -> 0.7.17 2018-01-22 01:58:36 +00:00
conglomerate conglomerate: init at 2017-09-10 2018-04-27 18:57:17 -04:00
dcm2niix dcm2niix: cmake is native, style 2018-01-15 16:53:28 +10:00
diamond
ecopcr
emboss
EZminc ezminc: init at 2017-08-29 2018-04-09 18:07:15 -04:00
freebayes freebayes: clean up build 2017-09-28 00:54:01 +02:00
igv igv: 2.4.9 -> 2.4.10 2018-03-31 08:54:46 -07:00
inormalize address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
iv neuron: 7.4 -> 7.5 2017-09-02 16:58:14 -04:00
kallisto kallisto: init at 0.43.1 2018-01-24 16:16:46 +00:00
minc-tools address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
minc-widgets address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
minimap2 minimap2: init at 2.10 2018-05-14 21:26:07 +01:00
mni_autoreg address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
mrbayes
muscle muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
N3 address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
ncbi-tools
neuron neuron: 7.4 -> 7.5 2017-09-02 16:58:14 -04:00
paml paml: 4.9g -> 4.9h 2018-05-03 15:13:15 +02:00
picard-tools picard-tools: 2.18.5 -> 2.18.7 (#41975) 2018-06-18 22:41:49 +02:00
platypus
plink
plink-ng darwin: Disable another bunch of packages never having built successfully 2017-09-22 19:49:57 +03:00
poretools
raxml raxml: 8.2.11 -> 8.2.12 (#41964) 2018-06-18 22:40:49 +02:00
samtools samtools: 1.7 -> 1.8 2018-04-10 13:04:09 -07:00
snpeff snpeff: 4.3t -> 4.3q 2018-03-12 16:03:44 +11:00
star star: 2.5.3a -> 2.6.0c (#40518) 2018-05-15 15:09:06 +02:00
varscan
vcftools vcftools: init at 0.1.15 (#31339) 2017-11-16 09:52:56 +02:00