73 lines
1.3 KiB
Nix
73 lines
1.3 KiB
Nix
{
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stdenv,
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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pytestCheckHook,
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pythonOlder,
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deprecated,
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humanize,
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matplotlib,
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nibabel,
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numpy,
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parameterized,
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scipy,
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simpleitk,
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torch,
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tqdm,
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typer,
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}:
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buildPythonPackage rec {
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pname = "torchio";
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version = "0.19.5";
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pyproject = true;
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disabled = pythonOlder "3.8";
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src = fetchFromGitHub {
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owner = "fepegar";
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repo = "torchio";
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rev = "refs/tags/v${version}";
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hash = "sha256-RqKJStUZhnSmsifn3WjYLfmRkkme+GOe6dp0E0MW9tE=";
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};
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propagatedBuildInputs = [
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deprecated
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humanize
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nibabel
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numpy
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scipy
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simpleitk
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torch
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tqdm
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typer
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] ++ typer.passthru.optional-dependencies.all;
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nativeCheckInputs = [
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pytestCheckHook
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matplotlib
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parameterized
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];
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disabledTests =
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[
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# tries to download models:
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"test_load_all"
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]
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++ lib.optionals stdenv.isAarch64 [
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# RuntimeError: DataLoader worker (pid(s) <...>) exited unexpectedly
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"test_queue_multiprocessing"
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];
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pythonImportsCheck = [
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"torchio"
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"torchio.data"
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];
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meta = with lib; {
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description = "Medical imaging toolkit for deep learning";
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homepage = "https://torchio.readthedocs.io";
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license = licenses.asl20;
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maintainers = [ maintainers.bcdarwin ];
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};
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}
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