bf2290c9e Fixed an implicit conversion change warning.
18caed60e Fixed some of the compiler warning from CDash.
d7d7cdd5b Merges with upstream reformated version.
d6cbd8301 Merge with unformated previous state of the remote branch.
9a6dec8bc Refactored control side function call from a VTKM_EXEC function.
ca5f79056 Swapped x and y dimensions when reading in contour trees from text files.
da83076d7 Merge branch 'master' into peter-changes
01c49f139 Wrote some documentation for the CT Height Branch Decomposition code.
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Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1899
4659d69c7 Remove some commented out code
aec75ab1a Suppress CUDA warning about device calling host
851864d0b Work around with Visual Studio 2015 issue
452a2e1c9 Suppress warnings about CUDA host/device mismatch
4fdefe9f1 Suppress some deprecated warnings in visual studio
5cfc14482 Implement old ListTag features with new ListTag implementations
d5fe4046c Remove instances of ListTag in favor of List
92db37623 Convert uses of ListTagBase to List
...
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1918
A new header named TypeList.h and the type lists have been redefined in
this new file. All the types have been renamed from `TypeListTag*` to
`TypeList*`. TypeListTag.h has been gutted to provide deprecated
versions of the old type list names.
There were also some other type lists that were changed from using the
old `ListTagBase` to the new `List`.
8520d70e0 Compile most frequently used VTK-m filters into a library
d1d61b9eb vtkm::filter::Filter passes filter policies by value
4ff021b08 Improve VTK-m compilation times by compiling more keys<T> types
Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1836
3ef234ef1 Move Oscillator to the sources directory
5c69f1bae Update Wavelet to use WorkletVisitPointsWithCells
62357dea0 Tangle source has better runtime performance
eb3d86654 Add a test explicitly for vtkm::source::Tangle
63f243809 Add vtkm::source::Wavelet as a new source
257dc1f84 Sources have a more consistent API and internal style.
2d455bbef Document what the Tangle source will generate
Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1850
VTK-m now provides the following filters with the default policy
as part of the vtkm_filter library:
- CellAverage
- CleanGrid
- ClipWithField
- ClipWithImplicitFunction
- Contour
- ExternalFaces
- ExtractStructured
- PointAverage
- Threshold
- VectorMagnitude
By building these as a library we hope to provide faster compile
times for consumers of VTK-m when using common configurations.
Consumers of VTK-m when enabling of dropping of unused functions
will see VTK-m functions dropped. Previously this didn't happen
as VTK-m didn't build object files with the correct flags for this.
By allowing the linker to remove unused symbols we see a significant
saving the file size of VTK-m tests, examples, and benchmarks.
An OpenMP build of the tests and benchmarks goes from 168MB to
141MB which is roughly a 16% filesize reduction.
Initially I had presumed that these changes would increase link times.
But in measurements the total wall time for compilation of VTK-m has
stayed about the same ( seeing a decrease of 1.5% ). Presumably the
increased computation is offset by the reduction in file writing.
Instead of having to be called for each target you can now
pass multiple targets at once. Do note that if you pass multiple
targets you will need to pass all the sources from those targets
that need to be 'device' compiled.
630768600 Suppress CUDA warnings
5fa02057a Rely less on overload resolution for ApplyPolicy
26d7bfd0d Force ArrayPolicy of a specific type to the right template
6c136b978 Remove vtkm::BaseComponent
07c59fcf7 Update filters with secondary fields to use new policy method
3039a18ba Add ability to get an array from a Field for a particular type
2b6e6da6c Add ability to get VariantArrayHandle as an ArrayHandleMultiplexer
6323d6803 Add recursive component queries to VecTraits
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !1829
9b78276ca Updating usage statement for temporal advection example
8e27562ce Adding information about sample datasets in example
fd23bb3c7 Update attributes to include all files in data to lfs
01d735e1a Merge branch 'master' of gitlab.kitware.com:vtk/vtk-m into fix_temporal_example
d9b038fdd Updating method name in unit test
b7191e257 Fixing temporal advection example
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1814
Previously, all the ApplyPolicy functions had the same name and used
template resolution to figure out which one to use. This was pretty
clear at first when there was just one for fields and one for cell sets.
But then it grew to several different types, particularly for fields. It
was hard to look at the code and figure out which form of ApplyPolicy
was being used, and compilers were starting to get confused.
Resolve the problem by giving all the methods unique names to make it
clear which one you expect to be called.
The `MultiBlock` class has been renamed to `PartitionedDataSet`, and its API
has been refactored to refer to "partitions", rather than "blocks".
Additionally, the `AddBlocks` method has been changed to `AppendPartitions` to
more accurately reflect the operation performed. The associated
`AssignerMultiBlock` class has also been renamed to
`AssignerPartitionedDataSet`.
This change is motivated towards unifying VTK-m's data model with VTK. VTK has
started to move away from `vtkMultiBlockDataSet`, which is a hierarchical tree
of nested datasets, to `vtkPartitionedDataSet`, which is always a flat vector
of datasets used to assist geometry distribution in multi-process environments.
This simplifies traversal during processing and clarifies the intent of the
container: The component datasets are partitions for distribution, not
organizational groupings (e.g. materials).
Ref #405
By removing the ability to have multiple CellSets in a DataSet
we can simplify the following things:
- Cell Fields now don't require a CellSet name when being constructed
- Filters don't need to manage what the active cellset is
To help provide a better time writing VTK-m filter this streamlines
the CreateResult API to provide a focused set of methods, based on
how CreateResult has been used by existing filters.
This is a very old example. Just about everything it does is using an
old style that is either not well supported or discouraged. The whole
example should be rewritten to be more modern.
This example was way too complicated to be considered "hello_world" and
it's graphics are too much of a pain to maintain. The demo example
covers the high points.
b622c7962 Fixed index out of bounds error for the cell counts array
4d61066e9 Removed all modifications in the internal device adapter algorithm header files.
06ac9f721 Revised version of the original mesh quality merge request
e54001367 Added few lines of code missing from cuda device adapter header
3dd34d251 Added custom CopyIf function
417dbcea7 Removed all modifications in the internal device adapter algorithm header files.
50cb805ce Fixed cuda device adapter alg
8c070caa0 Added few lines of code missing from cuda device adapter header
...
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Kenneth Moreland <kmorel@sandia.gov>
Merge-request: !1714
As the RuntimeDeviceTracker is a per thread construct we now make
it explicit that you can only get a reference to the per-thread
version and can't copy it.
9c2920072 UnitTestBoundingIntervalHierarchy handles systems under load better
671c1df5c Timer logs the proper device name when called with an invalid device
d3d66a331 GameOfLife example always uses the proper device adapter
Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1645
Previously the example would only time using the serial device
adapter, which wouldn't work when the user explicitly specified
a device on the command line.
We now have a couple of the examples also being built against
the installed version of VTK-m as a test. This allow us to verify
that VTK-m installs and can be found properly.
The timer class now is asynchronous and device independent. it's using an
similiar API as vtkOpenGLRenderTimer with Start(), Stop(), Reset(), Ready(),
and GetElapsedTime() function. For convenience and backward compability, Each
Start() function call will call Reset() internally and each GetElapsedTime()
function call will call Stop() function if it hasn't been called yet for keeping
backward compatibility purpose.
Bascially it can be used in two modes:
* Create a Timer without any device info. vtkm::cont::Timer time;
* It would enable timers for all enabled devices on the machine. Users can get a
specific elapsed time by passing a device id into the GetElapsedtime function.
If no device is provided, it would pick the maximum of all timer results - the
logic behind this decision is that if cuda is disabled, openmp, serial and tbb
roughly give the same results; if cuda is enabled it's safe to return the
maximum elapsed time since users are more interested in the device execution
time rather than the kernal launch time. The Ready function can be handy here
to query the status of the timer.
* Create a Timer with a device id. vtkm::cont::Timer time((vtkm::cont::DeviceAdapterTagCuda()));
* It works as the old timer that times for a specific device id.
This is a library that contains parts of worklets that can be
precompiled into a library.
Currently, this library contains the implementation of ScatterCounting.
Also
- Renamed vtkm::cont::make_DeviceAdapterIdFromName to just overload
make_DeviceAdapterId.
- Refactored CMake logic for unit tests
- Since we're now querying the device tracker for the names, they
cannot be all caps.
- Updated usages of InitLogging to use Initialize instead.
- Added changelog.
Previously, WorkletPointNeighborhood had a template argument to select
the size of the neighborhood. This change removes that template
argument. Instead, the vtkm::exec::arg::BoundaryState methods now take
in a size parameter when determining when it overlaps the boundary.
If in the future we want to add the ability to select the neighborhood
size at compile-time (for performance reasons), I suggest adding this
template argument to the OnBoundary tag for ExecutionSignature.
Now that the dispatcher does its own TryExecute, filters do not need to
do that. This change requires all worklets called by filters to be able
to execute without knowing the device a priori.
This will make it easier to support integrators as an ExecObject.
One side effect is that the integrators and partical advection
are not templated by the type of the field.
Regardless of the type of the field, there is probably little reason to
compute particle advection with less than 64 bit floats to account for
accumulated errors. This will make it easier to use these classes.
Make the types consistent in an std::accumulate call. Previously it was
taking vtkm::Id values, multiplying them as std::size_t, and then
storing them in an int. Now, the std::accumulate does everything as a
vtkm::Id and at the end converts the result to an std::size_t.
c05b04c9d Fix windows warnings of duplicate symbols
12b90c434 Rename PPP2 to Augmented.
6f5c383e1 Move PPP2 over to constexpr instead of defines
f828ebfd4 Update PPP2 to dispatcher that don't require a device adapter template
98fd16d9a Correct PPP2 warnings found from 32bit builders
b460f5611 Make sure ContourTreeApp obeys the desired device
432ee3422 Optimize the PPP2 ActiveGraphs to reduce size of device transfers
2370a6cc5 Refactor the PPP2 work based on Code Review and add UnitTests.
...
Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !1376
Rather than force all dispatchers to be templated on a device adapter,
instead use a TryExecute internally within the invoke to select a device
adapter.
Because this removes the need to declare a device when invoking a
worklet, this commit also removes the need to declare a device in
several other areas of the code.
6990b605b The multi backend example now doesn't share data between blocks
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Sujin Philip <sujin.philip@kitware.com>
Merge-request: !1344
The added files provide support for Lagrangian analysis of velocity fields of time-varying data. Examples show how to use the filter to generate data and a second example demonstrates consuming generated information to calculate new particle trajectories.
The oscillator is a simple analytical source of time-varying data.
It provides a function value at each point that is computed as a
sum of Gaussian kernels -- each with a specified position, amplitude,
frequency, and phase.
CMake 3.12 introduces a ...<max> syntax in the version given to
cmake_minimum_required to automatically set policies to NEW up
to that version. Use it to avoid listing policies explicitly.
Found via `codespell` and `grep`
more typos
includes source typo change and a typo that needs further review
follow-up typos
Follow-up typos
Revert a commit
Adding an example that demonstrates how to write a distributed filter
that customizes the execution for all blocks in a MultiBlock. This is a
reinterpretation of the `reduce/all_to_all` example provided by DIY.
This commit removes `vtkm::filter::Result`. All methods that used
`vtkm::filter::Result` simply change to use `vtkm::cont::Dataset` instead.
The utility API on `Result` that was used to add fields to the resulting
dataset is now available via `vtkm::filter::internal::CreateResult`.
The new and improved vtkm::cont::ColorTable provides a more feature complete
color table implementation that is modeled after
vtkDiscretizableColorTransferFunction. This class therefore supports different
color spaces ( rgb, lab, hsv, diverging ) and supports execution across all
device adapters.
Due to limitations in the CUDA MSBuild support and how CMake stores the language
of a source file, we had to change VTK-m over to using generated .cu files
to signal when we want CUDA compilation.
1. Add option to copy user supplied array in make_ArrayHandle.
2. Replace Field constructors that take user supplied arrays with make_Field.
3. Replace CoordinateSystem constructors that take user supplied arrays with
make_CoordinateSystem.
Sandia National Laboratories recently changed management from the
Sandia Corporation to the National Technology & Engineering Solutions
of Sandia, LLC (NTESS). The copyright statements need to be updated
accordingly.
e9f9a3d8 remove setting of DeveiceAdapter from cosmotools worklet
cdf84ccb Add sample input
6ca2683f Remove the data file for examples
f3766449 Cosmology halo finder
Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !919
Running friend of friends algorithm and then NxN most bound particle
after to find halo center. Cosmology center finder running NxN MBP
algorithm followed by a estimator reducing the problem to MxN MBP
to speed up run.
Conway's game of life is a very simple example of a point neighborhood worklet
that needs to access the 8 adjacent points of each point in a 2d structured grid
MSVC does not allow typename for non templated types while
compiling with c++98 std. (clang/gcc allow it)
Don't know about which standards Kitware uses to test builds, but
this should fix it.
Also removing unused parameter from the particle advection example.
Created ParticleAdvection.h for worklets that match the worklet pattern.
Slight reorganization of existing code to match this pattern.
Added a unittest particle advection.
