47 lines
1.1 KiB
Nix
47 lines
1.1 KiB
Nix
{lib, stdenv, fetchFromGitHub, unzip, which, python3, perl}:
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stdenv.mkDerivation rec {
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pname = "hisat2";
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version = "2.2.1";
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src = fetchFromGitHub {
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owner = "DaehwanKimLab";
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repo = "hisat2";
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rev = "v${version}";
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sha256 = "0lmzdhzjkvxw7n5w40pbv5fgzd4cz0f9pxczswn3d4cr0k10k754";
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};
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nativeBuildInputs = [ unzip which ];
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buildInputs = [ python3 perl ];
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installPhase = ''
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mkdir -p $out/bin
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cp hisat2 \
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hisat2-inspect-l \
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hisat2-build-s \
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hisat2-align-l \
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hisat2-inspect \
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hisat2-align-s \
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hisat2-inspect-s \
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hisat2-build-l \
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hisat2-build \
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extract_exons.py \
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extract_splice_sites.py \
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hisat2_extract_exons.py \
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hisat2_extract_snps_haplotypes_UCSC.py \
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hisat2_extract_snps_haplotypes_VCF.py \
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hisat2_extract_splice_sites.py \
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hisat2_simulate_reads.py \
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$out/bin
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'';
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meta = with lib; {
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description = "Graph based aligner";
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license = licenses.gpl3Plus;
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homepage = "https://daehwankimlab.github.io/hisat2/";
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maintainers = with maintainers; [ jbedo ];
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platforms = [ "x86_64-linux" "i686-linux" ];
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};
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}
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